Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30157
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 78 5e-15
Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical pr... 30 1.0
U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical pr... 28 4.1
U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z93393-5|CAB07690.1| 611|Caenorhabditis elegans Hypothetical pr... 27 7.1
Z73426-6|CAA97796.2| 853|Caenorhabditis elegans Hypothetical pr... 27 9.4
Z73425-9|CAA97791.2| 853|Caenorhabditis elegans Hypothetical pr... 27 9.4
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 27 9.4
AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical... 27 9.4
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 27 9.4
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 27 9.4
AC024796-11|AAK29890.2| 828|Caenorhabditis elegans Hypothetical... 27 9.4
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 77.8 bits (183), Expect = 5e-15
Identities = 33/33 (100%), Positives = 33/33 (100%)
Frame = +1
Query: 256 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 354
SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG
Sbjct: 65 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRG 97
Score = 63.3 bits (147), Expect = 1e-10
Identities = 39/107 (36%), Positives = 51/107 (47%)
Frame = +2
Query: 68 ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQT 247
ARPLV+VY EK E Q + LP VF+ PIRPDLV+ + + +N RQ + V+ +AG Q
Sbjct: 3 ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVNTKAGKQH 61
Query: 248 SADHGVLDVLSPEFXXXXXXXXXXXXXXXXXTCVVGGRMFAPTKPWR 388
SA+ GG MFAP K +R
Sbjct: 62 SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFR 108
>Z81094-7|CAB03153.2| 960|Caenorhabditis elegans Hypothetical
protein F58G11.2 protein.
Length = 960
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -3
Query: 394 QRPPGLR---GGEHTSTHDTCY-RRHPDRTYEYHHHGHAEFGRQ 275
+RP G + GG H H Y RR DR++ +HG + +G +
Sbjct: 49 RRPDGRQDSYGGGHQGNHGNSYGRREDDRSHSRDNHGGSRYGER 92
>U23523-9|AAC46564.1| 147|Caenorhabditis elegans Hypothetical
protein F53A9.9 protein.
Length = 147
Score = 28.3 bits (60), Expect = 4.1
Identities = 23/73 (31%), Positives = 32/73 (43%)
Frame = -3
Query: 490 AGTRYSNAAQRRLF*PFSPPPGLCSEGLTRRCQRPPGLRGGEHTSTHDTCYRRHPDRTYE 311
AGT + NA + P SPP G+ G PG HD +++H + ++
Sbjct: 86 AGTGFGNAG----YTP-SPPAGVPGNGFV------PGGVDVHDDHHHDGHHKKHGRKEHD 134
Query: 310 YHHHGHAEFGRQH 272
HHHGH G H
Sbjct: 135 -HHHGH-HHGHHH 145
>U23523-6|AAC46561.1| 86|Caenorhabditis elegans Hypothetical
protein F53A9.6 protein.
Length = 86
Score = 28.3 bits (60), Expect = 4.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 373 GGEHTSTHDTCYRRHPDRTYEYHHHGH 293
GG H H Y H + + + HHGH
Sbjct: 59 GGHHGGHHGGHYESHYESHHHHGHHGH 85
>Z99942-7|CAB17070.2| 462|Caenorhabditis elegans Hypothetical
protein H13N06.5 protein.
Length = 462
Score = 27.5 bits (58), Expect = 7.1
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = -3
Query: 364 HTSTHDTCYRRHPDRTYEYHHHGHAEFGRQH 272
H +HD H +++H H H + G H
Sbjct: 99 HGHSHDEEEDHHHGHAHDHHGHSHEDHGHSH 129
>Z93393-5|CAB07690.1| 611|Caenorhabditis elegans Hypothetical
protein Y48E1B.4 protein.
Length = 611
Score = 27.5 bits (58), Expect = 7.1
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +1
Query: 289 PRVRGGGTHRSGQGAFGNMCRGWTYVRP 372
P R G H GQ FG + WT RP
Sbjct: 15 PVSRDFGQHTFGQRGFGGLLEDWTTPRP 42
>Z73426-6|CAA97796.2| 853|Caenorhabditis elegans Hypothetical
protein F12F6.1 protein.
Length = 853
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 550 NQGKASGIFSINVPSKPERNAGTRYSNAA 464
N+G+ FS+ VPS+P + TR N A
Sbjct: 211 NEGRVQDPFSLKVPSRPFDGSVTRAGNNA 239
>Z73425-9|CAA97791.2| 853|Caenorhabditis elegans Hypothetical
protein F12F6.1 protein.
Length = 853
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 550 NQGKASGIFSINVPSKPERNAGTRYSNAA 464
N+G+ FS+ VPS+P + TR N A
Sbjct: 211 NEGRVQDPFSLKVPSRPFDGSVTRAGNNA 239
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 229 GGWSPNQC*SWGTGRAVARIPRVRGGGTH--RSGQGAFGN---MCRGWTYVRPHEALAGV 393
G P+Q + + IP+V G G + G+G +G+ M RG VRP L G
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRPAGTLPGG 2187
Query: 394 G 396
G
Sbjct: 2188 G 2188
>AL132949-31|CAB61110.3| 297|Caenorhabditis elegans Hypothetical
protein Y53F4B.36 protein.
Length = 297
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/58 (20%), Positives = 25/58 (43%)
Frame = +2
Query: 53 MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 226
MS++V P +S V + + F++ P ++ D H+ + + CV+
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVA 239
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 27.1 bits (57), Expect = 9.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -3
Query: 367 EHTSTHDTCYRRHPDRTYEYHHHGH 293
EH + H + H D+ +HHHGH
Sbjct: 694 EHGAHHGAHHGHHDDKE-NHHHHGH 717
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 27.1 bits (57), Expect = 9.4
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Frame = +1
Query: 229 GGWSPNQC*SWGTGRAVARIPRVRGGGTH--RSGQGAFGN---MCRGWTYVRPHEALAGV 393
G P+Q + + IP+V G G + G+G +G+ M RG VRP L G
Sbjct: 2128 GSQQPHQQQQQQPQQRIQYIPQVTGSGNNGGGGGRGGYGSTLVMPRGGRVVRPAGTLPGG 2187
Query: 394 G 396
G
Sbjct: 2188 G 2188
>AC024796-11|AAK29890.2| 828|Caenorhabditis elegans Hypothetical
protein Y48G1C.8 protein.
Length = 828
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = +1
Query: 229 GGWSPNQC*SWGTGRAVARIPRVRGGGTH--RSGQGAFGNMCRGWTYVR 369
GGW +Q T +AR PR+R + R+ GN+C + YVR
Sbjct: 499 GGWHSSQLCLVETMSVLARCPRLRKRLIYIQRNNTITIGNVCYIYEYVR 547
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,734,131
Number of Sequences: 27780
Number of extensions: 326118
Number of successful extensions: 1036
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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