Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30157
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   0.93 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   2.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   6.5  
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    21   8.6  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    21   8.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   8.6  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   8.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +2

Query: 452  KAPLRSVAVPGPSVPFRLRGHI 517
            K P  +V VP P V +++RG +
Sbjct: 1295 KLPCLAVGVPAPEVTWKVRGAV 1316


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 310 YHHHGHAEFGRQHVQY 263
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366



 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 366 SPPRSPGG 389
           SPPR PGG
Sbjct: 397 SPPRGPGG 404


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +1

Query: 322 GQGAFGNMCRG 354
           G G FG++CRG
Sbjct: 640 GGGEFGDVCRG 650


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 495 LSGLEGTFIEKIPEAFPWFLGRT 563
           +SG  G  + ++    PWF G T
Sbjct: 120 ISGWHGDNMLEVSSKMPWFKGWT 142


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 495 LSGLEGTFIEKIPEAFPWFLGRT 563
           +SG  G  + ++    PWF G T
Sbjct: 136 ISGWHGDNMLEVSSKMPWFKGWT 158


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +3

Query: 495 LSGLEGTFIEKIPEAFPWFLGRT 563
           +SG  G  + ++    PWF G T
Sbjct: 193 ISGWHGDNMLEVSSKMPWFKGWT 215


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 292 AEFGRQHVQYPMISTGLVTSLLAHAVGLPRVL 197
           ++FG  +VQY      L T  LA AV    VL
Sbjct: 284 SQFGENNVQYQGSEDILNTQSLAKAVSKNGVL 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,331
Number of Sequences: 438
Number of extensions: 3976
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)