Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30157
         (567 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    86   2e-17
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    84   7e-17
At5g17650.1 68418.m02069 glycine/proline-rich protein glycine/pr...    31   0.71 
At3g48240.1 68416.m05264 octicosapeptide/Phox/Bem1p (PB1) domain...    30   1.2  
At1g57750.1 68414.m06552 cytochrome P450, putative similar to cy...    29   1.6  
At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein ...    29   2.9  
At4g39480.1 68417.m05585 cytochrome P450 family protein contains...    28   3.8  
At5g01010.1 68418.m00001 expressed protein                             28   5.0  
At3g12430.1 68416.m01548 expressed protein ; expression supporte...    28   5.0  
At3g04640.1 68416.m00497 glycine-rich protein predicted proteins...    28   5.0  
At1g28080.1 68414.m03437 expressed protein                             27   6.6  
At5g50480.1 68418.m06252 CCAAT-box binding transcription factor ...    27   8.7  
At3g25840.1 68416.m03219 protein kinase family protein contains ...    27   8.7  

>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 85.8 bits (203), Expect = 2e-17
 Identities = 48/114 (42%), Positives = 60/114 (52%), Gaps = 2/114 (1%)
 Frame = +2

Query: 53  MSLSVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 226
           M+ + ARPLV++ +   +  T Q +   LP V  AP+RPD+VN VH  +S NSRQPY VS
Sbjct: 1   MAAAAARPLVTIQTLDGDMSTDQSSTVVLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVS 60

Query: 227 KEAGHQTSADHGVLDVLSPEFXXXXXXXXXXXXXXXXXTCVVGGRMFAPTKPWR 388
           K+AGHQTSA+                                GGRMFAPTK WR
Sbjct: 61  KKAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWR 114



 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 30/39 (76%), Positives = 32/39 (82%)
 Frame = +1

Query: 256 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGWTYVRP 372
           SWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRG     P
Sbjct: 71  SWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAP 109


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 48/111 (43%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
 Frame = +2

Query: 62  SVARPLVSVYSEKSE--TVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEA 235
           + ARPLV+V     +  T Q     LP V  AP+RPD+VN VH  +S NSRQPY VSK+A
Sbjct: 5   AAARPLVTVQGLDGDMSTDQSTTVTLPDVMTAPVRPDIVNFVHAQISNNSRQPYAVSKKA 64

Query: 236 GHQTSADHGVLDVLSPEFXXXXXXXXXXXXXXXXXTCVVGGRMFAPTKPWR 388
           GHQTSA+                                GGRMFAPTK WR
Sbjct: 65  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTKIWR 115



 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 30/39 (76%), Positives = 32/39 (82%)
 Frame = +1

Query: 256 SWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGWTYVRP 372
           SWGTGRAV+RIPRV GGGTHR+GQ AFGNMCRG     P
Sbjct: 72  SWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAP 110


>At5g17650.1 68418.m02069 glycine/proline-rich protein
           glycine/proline-rich protein GPRP - Arabidopsis
           thaliana, EMBL:X84315
          Length = 173

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -3

Query: 373 GGEHTSTHDTCYRRHPDRTYEYHHHGHAEF 284
           G  H S H   Y  H    Y Y +HGH +F
Sbjct: 116 GAHHMSHHHGHYGHHHGHGYGYGYHGHGKF 145


>At3g48240.1 68416.m05264 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein contains Pfam profile PF00564:
           PB1 domain
          Length = 180

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 392 LAPSRQTFRTKSGGGGKRLKKAPLRSVAVPGP 487
           L+P +Q     SGGGG    K+P   VA P P
Sbjct: 108 LSPPKQMSPRSSGGGGDLSPKSPFSVVASPSP 139


>At1g57750.1 68414.m06552 cytochrome P450, putative similar to
           cytochrome P450 GI:4688670 from [Catharanthus roseus]
          Length = 497

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/49 (32%), Positives = 29/49 (59%)
 Frame = +2

Query: 77  LVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 223
           LV +++  SE+++    PLPF  K+P +PD++   H  +  NS+   C+
Sbjct: 351 LVYLHAALSESMR-LYPPLPFNHKSPAKPDVLPSGH-KVDANSKIVICI 397


>At4g25610.1 68417.m03689 zinc finger (C2H2 type) family protein
           contains Pfam profile: PF00096 zinc finger, C2H2 type
          Length = 586

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
 Frame = +2

Query: 44  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYC- 220
           S + ++ + RP VS    K+ TV G           P  P++ N  H+S+  N+ +    
Sbjct: 467 SEQSTVKIWRP-VSSQGRKTSTVNGNTDKED-KRSNPTTPEVKNAHHISLQFNNHEAKAF 524

Query: 221 VSKEAGHQTSADHGVLDVLSPE 286
           ++K     TSA+H  L VLS E
Sbjct: 525 LAKRWKEATSAEHVTL-VLSQE 545


>At4g39480.1 68417.m05585 cytochrome P450 family protein contains
           Pfam profile: PF00067 cytochrome P450
          Length = 989

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 128 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 223
           P+PF  K+P +PD++   H  +  NSR  +C+
Sbjct: 384 PVPFNHKSPAKPDVLPSGH-KVKANSRILFCL 414



 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 128 PLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV 223
           P+PF  K+P +PD++   H  +  NS+  +C+
Sbjct: 857 PVPFQHKSPTKPDVLPSGH-KVDANSKILFCL 887


>At5g01010.1 68418.m00001 expressed protein
          Length = 409

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = -3

Query: 253 STGLVTSLLAHAVGLPRVLGHRNVNIIDQVR-TDGRLEHEREGLG 122
           +TG+  +L+ + VG+P+VL    ++ I Q+   DG +E +RE  G
Sbjct: 203 ATGVYKTLVKYLVGVPQVL----LDFIRQINDDDGPMEEQRERYG 243


>At3g12430.1 68416.m01548 expressed protein ; expression supported
           by MPSS
          Length = 238

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 131 GAWLHPAPSHSSLSTPTLKVGLPID--SFRYFSEAIPPKY 18
           G W+H   SH+  S+  L VG+ +      Y+S + P +Y
Sbjct: 38  GQWIHDVLSHNRFSSHPLVVGVGVQWTPSSYYSASSPVRY 77


>At3g04640.1 68416.m00497 glycine-rich protein predicted proteins,
           Arabidopsis thaliana
          Length = 159

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 268 GRAVARIPRVRGGGTHRSGQGAFG--NMCRGWTYVRPHEALAGVGTV 402
           G  +  IP + GGGTHRSG  + G      GW  +     LAG+G V
Sbjct: 116 GGGLRPIP-IYGGGTHRSGHHSSGGRETASGWLGL---SILAGLGLV 158


>At1g28080.1 68414.m03437 expressed protein
          Length = 291

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = +2

Query: 119 AAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSKEAGHQTSADHGVLD 271
           ++KP    + AP RP  ++D  V+ + NS    C   E G   S++  VLD
Sbjct: 179 SSKPWIPQYMAPFRPSSLSDRDVT-NNNSLSRSCCVDEGGAGPSSEFRVLD 228


>At5g50480.1 68418.m06252 CCAAT-box binding transcription factor
           Hap5a, putative GI:14577940 CCAAT-binding protein
           subunit HAP5 {Hypocrea jecorina} similar to
           Transcription factor GB:CAA74053 GI:2398533 from
           [Arabidopsis thaliana] similarity to transcription
           factor Hap5a similar to transcription factor Hap5a
           [Arabidopsis thaliana](GI:6523090)
          Length = 202

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 341 TCVVGGRMFAPTKPWRALAPSRQTFRTKSGGGG 439
           T +VG  M+AP++ W A A   +     +GG G
Sbjct: 167 TPMVGSGMYAPSQAWPAAAGDGEDDAEDNGGNG 199


>At3g25840.1 68416.m03219 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 361 TSTHDT--CYRRHPDRTYEYHHHGHAEFGRQHVQYPMISTGLVTSLLAHAVGLPRVLGH 191
           +S+ DT    +RH  R +++HHH H     +  +  + S G  T +L      P V+ +
Sbjct: 19  SSSDDTEKASKRHKHRHHKHHHHRHRHHRDKKRENEIPSAGDETEILDVTPAAPIVVSN 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,251,238
Number of Sequences: 28952
Number of extensions: 315396
Number of successful extensions: 976
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1092379416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)