Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30156
         (775 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9VGN9 Cluster: Probable ribosome biogenesis protein RL...    42   0.017
UniRef50_UPI0000E45EBB Cluster: PREDICTED: hypothetical protein;...    37   0.49 
UniRef50_Q56XM8 Cluster: Nodulin-like protein; n=2; Arabidopsis ...    35   2.6  
UniRef50_Q1CY40 Cluster: Serine/threonine kinase family protein;...    34   3.4  
UniRef50_A0E454 Cluster: Chromosome undetermined scaffold_77, wh...    33   6.0  
UniRef50_A3DGK1 Cluster: Putative uncharacterized protein precur...    33   7.9  
UniRef50_A2EKH3 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  

>UniRef50_Q9VGN9 Cluster: Probable ribosome biogenesis protein
           RLP24; n=10; Coelomata|Rep: Probable ribosome biogenesis
           protein RLP24 - Drosophila melanogaster (Fruit fly)
          Length = 191

 Score = 41.9 bits (94), Expect = 0.017
 Identities = 27/52 (51%), Positives = 36/52 (69%), Gaps = 6/52 (11%)
 Frame = +1

Query: 1   VQRDISLIKSPAAGLKQRQALEATE----ME--VEPETIEVVDAKGRKQIIE 138
           VQR++SLI+SPAAGLKQR+A EA E    ME  +  E I  VDA+  ++ +E
Sbjct: 127 VQRNMSLIRSPAAGLKQRRAQEAAEEAALMEEDLPEEKITYVDARELEKKLE 178


>UniRef50_UPI0000E45EBB Cluster: PREDICTED: hypothetical protein;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 1947

 Score = 37.1 bits (82), Expect = 0.49
 Identities = 15/59 (25%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +2

Query: 407 CLFSLEKGFLKKNPPVVRIKLERTAKCTFILVIVNFIE*QI-FPNLFLKFSQSQYVRVF 580
           C+  +++  LK  P ++ +  + +A  T  + ++ F+   I FP L+  F +S+Y+ +F
Sbjct: 726 CVIEMQETMLKVLPSIILVMSQMSATATMAIPVLEFLSSLIWFPKLYANFVESEYMSIF 784


>UniRef50_Q56XM8 Cluster: Nodulin-like protein; n=2; Arabidopsis
           thaliana|Rep: Nodulin-like protein - Arabidopsis
           thaliana (Mouse-ear cress)
          Length = 540

 Score = 34.7 bits (76), Expect = 2.6
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -2

Query: 543 NRFGKICYSIKFTITKINVHLAVLSNFI-LTTGGFF 439
           +  G+ICYS+ ++ TKI V L  +SNF+    GG+F
Sbjct: 345 DNLGQICYSLGYSNTKIFVSLISISNFLGRVAGGYF 380


>UniRef50_Q1CY40 Cluster: Serine/threonine kinase family protein;
           n=3; Cystobacterineae|Rep: Serine/threonine kinase
           family protein - Myxococcus xanthus (strain DK 1622)
          Length = 951

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 18/43 (41%), Positives = 22/43 (51%)
 Frame = -3

Query: 629 DRSNFRHAPSWGLWGKETLSHIGFGKILRTDLGKFVTQ*NLQL 501
           +R  F HA  W   GK TL  +G   +LR DL   V + NL L
Sbjct: 650 ERERFEHASQWARLGKATLQRLGGDAVLRGDL--LVNEANLAL 690


>UniRef50_A0E454 Cluster: Chromosome undetermined scaffold_77, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_77,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 799

 Score = 33.5 bits (73), Expect = 6.0
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = +1

Query: 388 RAEHLSLFILIGKRVFKKKPPGSKNKVRENCQVYIYFGNCKFY*VTNFPKS 540
           + + LS+F ++G  V  K  PG+   +++   +Y YFG   F+  T FP++
Sbjct: 459 QTDDLSIFYIVGGSVIVK--PGNSEIIKKKLGLYSYFGEWSFF--TGFPRT 505


>UniRef50_A3DGK1 Cluster: Putative uncharacterized protein
           precursor; n=1; Clostridium thermocellum ATCC 27405|Rep:
           Putative uncharacterized protein precursor - Clostridium
           thermocellum (strain ATCC 27405 / DSM 1237)
          Length = 294

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = -2

Query: 576 TLTYWLWENFKNRFGKICYSIKFTITKINVHLAVLSNFILTTGGFFFKNPFSNENKQ*QM 397
           T  Y + E F N +  +  S+  ++  ++  L +L  F++ T        F  E  + Q+
Sbjct: 5   TTKYIIKEGFVNTYRNVLMSLA-SMGVVSASLIILGFFLVMTANIEHNTRFLKEQPEMQV 63

Query: 396 FCSPN 382
           FC+PN
Sbjct: 64  FCNPN 68


>UniRef50_A2EKH3 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 87

 Score = 33.1 bits (72), Expect = 7.9
 Identities = 12/29 (41%), Positives = 22/29 (75%)
 Frame = -3

Query: 395 SARQIKKKNDVLLLRIYNFKNMLNHQNSD 309
           S  QI ++N++LL R+YN++N+L+   +D
Sbjct: 28  SCHQILRENEILLQRLYNYQNLLSSSMAD 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 744,902,078
Number of Sequences: 1657284
Number of extensions: 15101885
Number of successful extensions: 34431
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 33139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34425
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65027411410
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)