Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30156
         (775 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    23   2.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   6.3  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   6.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.3  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 555 ENFKNRFGKICYSIKFTITKINVHLAVLSNF 463
           +    +FG + YSI +    I V+LA+L  F
Sbjct: 104 QRIDKQFGLLGYSINYRRISIFVNLAILGVF 134


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 557 QSQYVRVFLSPIVPNWGHAEN 619
           Q+Q  R + +PIVP++ +  N
Sbjct: 84  QTQPARFYSTPIVPHFAYNHN 104


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = -3

Query: 623 SNFRHAPSWGLWGKETLSHIGFGKILRTDLGK 528
           +N+ +  +       T+SH  FG  L T  GK
Sbjct: 254 NNYPYYSNMDYLSSSTMSHSQFGNGLETSWGK 285


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 79  EVEPETIEVVDA 114
           E+EPETIE  DA
Sbjct: 287 ELEPETIESQDA 298


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 79  EVEPETIEVVDA 114
           E+EPETIE  DA
Sbjct: 520 ELEPETIESQDA 531


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 79  EVEPETIEVVDA 114
           E+EPETIE  DA
Sbjct: 520 ELEPETIESQDA 531


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,617
Number of Sequences: 336
Number of extensions: 4296
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20857569
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)