Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30156
         (775 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase Exg3|Schizosaccha...    27   3.9  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   3.9  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    27   3.9  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    26   6.9  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    26   6.9  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    25   9.1  
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo...    25   9.1  
SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor Raf1|S...    25   9.1  

>SPBC2D10.05 |exg3||glucan 1,3-beta-glucosidase
           Exg3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 464

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 350 FSEVEHHSFFLFGEQNICH 406
           F  V+HHS+F FG + +CH
Sbjct: 243 FYVVDHHSYFCFGGE-LCH 260


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -2

Query: 621 KFSACPQLGTMGERNTLTYWLWEN 550
           K S CP+LGT G     TY + EN
Sbjct: 656 KLSLCPRLGTCGRFQLRTYVVDEN 679


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 383  IKKKNDVLLLRIYNFKNMLNHQNSDPANIYIQTNESLS 270
            I K  ++  LR+YN  +     NSD  +  +++NES++
Sbjct: 1160 IVKSFELFALRLYNALSKNYEMNSDIKDCIVESNESMN 1197


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
 Frame = -2

Query: 699  FTPLMVEIEGGKQFCSIAFLKKYRPVKF-SACPQLGTMGERNTLTYWLWENFKNRFGKIC 523
            F+ ++VEI     F ++ FL  + P+KF       G       L Y  ++ + + FG+  
Sbjct: 1298 FSAIIVEIPFNLVFGTLFFLCWFYPIKFYKHIHHPGDKTGYAWLLYMFFQMYFSTFGQAV 1357

Query: 522  YSIKFTITKINVHLAVLSNFILTTGGFFFKN 430
             S        +V  ++L  F++T  G    N
Sbjct: 1358 ASACPNAQTASVVNSLLFTFVITFNGVLQPN 1388


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 204 NVKEAK*IVSKYHVLQSWISKYAQGFICLNVNISR 308
           NVK     V  YH     ++ Y QG I  N+ +SR
Sbjct: 263 NVKNVLTDVETYHEFLKLLNLYVQGIIDRNILVSR 297


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -2

Query: 654 SIAFLKKYRPVKFSACPQLGTMGERNTLTYWLWENFKNRFGKI 526
           SI +   Y+  K      L ++ +RNT+  WL   F  +FG I
Sbjct: 228 SIFYRSSYKKFKQDLYFNLHSICDRNTVHMWLQWIFPRQFGLI 270


>SPCC4G3.09c |gyp3||GTPase activating protein
           Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 635

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 368 DVLLLRIYNFKNMLNHQ-NSDPANIYIQTNESLSIFTYP*LQNMI 237
           D L+  IY+  N+L H+ NSD A+I    + + +   Y  LQN +
Sbjct: 85  DALVYPIYSHHNILEHENNSDYASITPSNHPAFTSCAY--LQNPV 127


>SPCC613.12c |raf1|dos1, cmc1, clr8|Rik1-associated factor
           Raf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 638

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = -2

Query: 603 QLGTMGERNTLTYWLWENFKNRFGKICYSIKFTITKINVHLAVLSN--FILTTGG 445
           Q+G +   NTL+         R  K+C  + FT T+ +++ A +SN   ++T+ G
Sbjct: 455 QVGFVASSNTLSNGRVYYLDTRMYKVC--LNFTTTQKDINHATISNSGILVTSSG 507


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,195,487
Number of Sequences: 5004
Number of extensions: 68118
Number of successful extensions: 145
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)