Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30156
         (775 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0008 + 12239759-12239923,12240404-12240443,12241278-122414...    33   0.25 
11_04_0274 - 15667178-15667444,15668352-15668678,15669430-156695...    33   0.33 
01_06_1805 - 39999987-40000169,40000648-40000974,40001724-400020...    31   1.0  
08_02_1435 + 27079184-27082006                                         29   4.1  

>12_02_0008 +
           12239759-12239923,12240404-12240443,12241278-12241435,
           12242400-12242462,12243149-12243268,12243388-12243684,
           12245012-12245335,12246411-12246680
          Length = 478

 Score = 33.1 bits (72), Expect = 0.25
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +1

Query: 400 LSLFILIGKRVFKKKPPGSKNKVRENCQVYIYFGNCKFY*VTNFPKSVLKIFPKPIC--E 573
           + ++ + G+ +F ++P       +  CQ Y+  G+CKF  V  F     ++ P P C   
Sbjct: 328 VGVYTVQGENIFPERPD------QPECQFYMKTGDCKFGAVCKFHHPKERLVPAPNCALN 381

Query: 574 SVSFPHSPQLGACRKFDR 627
           S+  P  P    C  + R
Sbjct: 382 SLGLPLRPGEPVCTFYSR 399


>11_04_0274 -
           15667178-15667444,15668352-15668678,15669430-15669563,
           15669669-15669726,15669842-15669961,15670814-15670876,
           15671388-15671539,15673002-15673116,15673907-15673981,
           15674474-15674538,15675020-15675128
          Length = 494

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 2/78 (2%)
 Frame = +1

Query: 400 LSLFILIGKRVFKKKPPGSKNKVRENCQVYIYFGNCKFY*VTNFPKSVLKIFPKPIC--E 573
           L L+ +  + +F ++P       +  CQ Y+  G+CKF  V  F     +I P P C   
Sbjct: 345 LGLYTVQRESIFPERPD------QPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALS 398

Query: 574 SVSFPHSPQLGACRKFDR 627
           S+  P  P    C  + R
Sbjct: 399 SLGLPLRPGEPICTFYSR 416


>01_06_1805 -
           39999987-40000169,40000648-40000974,40001724-40002017,
           40002112-40002231,40002714-40002776,40003150-40003310,
           40003864-40004035
          Length = 439

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +1

Query: 478 CQVYIYFGNCKFY*VTNFPKSVLKIFPKPIC--ESVSFPHSPQLGACRKFDR 627
           CQ Y+  G+CKF  V  F    ++  P P C    V  P  P    C+ + R
Sbjct: 338 CQYYMKTGDCKFGAVCKFHHPRVRSMPTPDCVLSPVGLPLRPGEELCKFYSR 389


>08_02_1435 + 27079184-27082006
          Length = 940

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 6/113 (5%)
 Frame = -2

Query: 774 FFNISHVKFLIKTPGINQIKLKNYWFTPLMVEIEG------GKQFCSIAFLKKYRPVKFS 613
           F N+S +  L+      ++ +K+ WF P  +   G      G QF +  +L+    +K  
Sbjct: 391 FTNLSRLDALVLASNSFKVVVKHSWFPPFQLTKLGLHGCLVGPQFPT--WLQSQTRIKMI 448

Query: 612 ACPQLGTMGERNTLTYWLWENFKNRFGKICYSIKFTITKINVHLAVLSNFILT 454
               LG+ G R  L  W+W NF +    +  S+     ++   L V S  ++T
Sbjct: 449 ---DLGSAGIRGALPDWIW-NFSSPMASLNVSMNNITGELPASL-VRSKMLIT 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,533,651
Number of Sequences: 37544
Number of extensions: 395631
Number of successful extensions: 841
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 826
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 841
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)