Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30156
(775 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ... 29 4.9
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ... 29 4.9
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 29 4.9
Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical pr... 28 6.4
U88181-3|AAB42302.2| 523|Caenorhabditis elegans Hypothetical pr... 28 6.4
AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassi... 28 6.4
AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative pota... 28 6.4
>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform a protein.
Length = 1219
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/62 (38%), Positives = 30/62 (48%)
Frame = -2
Query: 636 KYRPVKFSACPQLGTMGERNTLTYWLWENFKNRFGKICYSIKFTITKINVHLAVLSNFIL 457
K P+KFSA P L G TL N +RFGK I F T NV +S+++L
Sbjct: 204 KIIPLKFSANPILEAFGNAKTLR----NNNSSRFGKF-VQIHFADTG-NVAGGYVSHYLL 257
Query: 456 TT 451
T
Sbjct: 258 ET 259
>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform b protein.
Length = 1144
Score = 28.7 bits (61), Expect = 4.9
Identities = 24/62 (38%), Positives = 30/62 (48%)
Frame = -2
Query: 636 KYRPVKFSACPQLGTMGERNTLTYWLWENFKNRFGKICYSIKFTITKINVHLAVLSNFIL 457
K P+KFSA P L G TL N +RFGK I F T NV +S+++L
Sbjct: 204 KIIPLKFSANPILEAFGNAKTLR----NNNSSRFGKF-VQIHFADTG-NVAGGYVSHYLL 257
Query: 456 TT 451
T
Sbjct: 258 ET 259
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +2
Query: 410 LFSLEKGFLKKNPPVVRIKLERTAKCTF 493
L+ +EKGFL PV+ I+ E + C F
Sbjct: 352 LYPMEKGFLFIQKPVMYIRFEEISSCHF 379
>Z68104-7|CAI79159.1| 1086|Caenorhabditis elegans Hypothetical
protein F08B12.3c protein.
Length = 1086
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 563 QYVRVFLSPIVPNWGHAENLTGLYFFKKAML-QNCFPPSIST 685
QYV++F + + HAE L FK A+L NC P IST
Sbjct: 414 QYVQIFRAETKMHIEHAEVLICEDEFKYALLANNCICPGIST 455
>Z68104-4|CAA92116.1| 1107|Caenorhabditis elegans Hypothetical
protein F08B12.3b protein.
Length = 1107
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 563 QYVRVFLSPIVPNWGHAENLTGLYFFKKAML-QNCFPPSIST 685
QYV++F + + HAE L FK A+L NC P IST
Sbjct: 435 QYVQIFRAETKMHIEHAEVLICEDEFKYALLANNCICPGIST 476
>Z68104-3|CAA92115.1| 1119|Caenorhabditis elegans Hypothetical
protein F08B12.3a protein.
Length = 1119
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 563 QYVRVFLSPIVPNWGHAENLTGLYFFKKAML-QNCFPPSIST 685
QYV++F + + HAE L FK A+L NC P IST
Sbjct: 435 QYVQIFRAETKMHIEHAEVLICEDEFKYALLANNCICPGIST 476
>U88181-3|AAB42302.2| 523|Caenorhabditis elegans Hypothetical
protein C55B6.1a protein.
Length = 523
Score = 28.3 bits (60), Expect = 6.4
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 3/86 (3%)
Frame = -2
Query: 690 LMVEIEGGKQFCS-IAFLKK-YRPVKFSACPQLGTMGERNTLTYWLWENFKNRFGKICYS 517
++VEIE + F + +KK Y + +A +G +RN++ W K IC++
Sbjct: 50 VLVEIEPEQLFLQFLRVIKKAYETLPPNAHVDVGLCTQRNSIVLWNKRTLKEETRIICWN 109
Query: 516 IKFTITKI-NVHLAVLSNFILTTGGF 442
K K N++ + L + GGF
Sbjct: 110 DKRANNKCHNLNNSFLLKALNLAGGF 135
>AF232770-1|AAF37866.1| 1107|Caenorhabditis elegans SLO-2 potassium
channel protein.
Length = 1107
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 563 QYVRVFLSPIVPNWGHAENLTGLYFFKKAML-QNCFPPSIST 685
QYV++F + + HAE L FK A+L NC P IST
Sbjct: 435 QYVQIFRAETKMHIEHAEVLICEDEFKYALLANNCICPGIST 476
>AF173828-1|AAD51350.1| 1119|Caenorhabditis elegans putative
potassium channel Slo-2 protein.
Length = 1119
Score = 28.3 bits (60), Expect = 6.4
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 563 QYVRVFLSPIVPNWGHAENLTGLYFFKKAML-QNCFPPSIST 685
QYV++F + + HAE L FK A+L NC P IST
Sbjct: 435 QYVQIFRAETKMHIEHAEVLICEDEFKYALLANNCICPGIST 476
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,545,600
Number of Sequences: 27780
Number of extensions: 381136
Number of successful extensions: 869
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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