Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30156
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   3.2  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   5.5  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        22   7.3  
M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee preprosec...    21   9.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   9.6  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   9.6  
AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.          21   9.6  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = -2

Query: 606 PQLGTMGERNTLTYWLWENFKNRFGKICYSIKFTITKINVHLA 478
           P  GT+  R            N+  ++C+S+KF   K+ V LA
Sbjct: 518 PNPGTVFARLLSVLTELRTLGNQNSEMCFSLKFKNKKLPVFLA 560


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 607 ACRKFDRSILFQESYAAELFSTLNLNH*W 693
           AC+     ++ + S    L +TLN+ H W
Sbjct: 14  ACQNIRGGVVRENSSGKNLTNTLNVIHKW 42


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 225 IVSKYHVLQSWISKY 269
           +  KY +LQ+W+ K+
Sbjct: 64  VSEKYGILQNWMDKF 78


>M12598-1|AAA27733.1|   77|Apis mellifera protein ( Bee
           preprosecapin mRNA, complete cds. ).
          Length = 77

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 52  RQALEATEMEVEPETIEVVDAKGR 123
           RQ+LEA   ++ PE   ++D   R
Sbjct: 37  RQSLEARSADLVPEPRYIIDVPPR 60


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 569 VRVFLSPIVPNWGHAENLTGLY 634
           VR+FL P    +GH  +L   Y
Sbjct: 514 VRIFLGPKYDEFGHEVDLVHNY 535


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 569 VRVFLSPIVPNWGHAENLTGLY 634
           VR+FL P    +GH  +L   Y
Sbjct: 514 VRIFLGPKYDEFGHEVDLVHNY 535


>AF134821-1|AAD40236.1|  226|Apis mellifera hexamerin protein.
          Length = 226

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 569 VRVFLSPIVPNWGHAENLTGLY 634
           VR+FL P    +GH  +L   Y
Sbjct: 140 VRIFLGPKYDEFGHEVDLVHNY 161


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,530
Number of Sequences: 438
Number of extensions: 4556
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)