Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30156
(775 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g50630.1 68418.m06272 nodulin family protein similar to nodul... 35 0.069
At5g50520.1 68418.m06257 nodulin family protein similar to nodul... 35 0.069
At5g19300.1 68418.m02300 expressed protein contains Pfam profile... 29 4.5
At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein ... 29 4.5
At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein ... 29 4.5
At4g39140.4 68417.m05544 expressed protein 28 6.0
At4g39140.3 68417.m05543 expressed protein 28 6.0
At4g39140.2 68417.m05542 expressed protein 28 6.0
At4g39140.1 68417.m05541 expressed protein 28 6.0
At1g76870.1 68414.m08945 hypothetical protein 28 6.0
>At5g50630.1 68418.m06272 nodulin family protein similar to
nodulin-like protein [Arabidopsis thaliana] GI:3329368,
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 540
Score = 34.7 bits (76), Expect = 0.069
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -2
Query: 543 NRFGKICYSIKFTITKINVHLAVLSNFI-LTTGGFF 439
+ G+ICYS+ ++ TKI V L +SNF+ GG+F
Sbjct: 345 DNLGQICYSLGYSNTKIFVSLISISNFLGRVAGGYF 380
>At5g50520.1 68418.m06257 nodulin family protein similar to
nodulin-like protein [Arabidopsis thaliana] GI:3329368,
nodule-specific protein Nlj70 [Lotus japonicus]
GI:3329366
Length = 540
Score = 34.7 bits (76), Expect = 0.069
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -2
Query: 543 NRFGKICYSIKFTITKINVHLAVLSNFI-LTTGGFF 439
+ G+ICYS+ ++ TKI V L +SNF+ GG+F
Sbjct: 345 DNLGQICYSLGYSNTKIFVSLISISNFLGRVAGGYF 380
>At5g19300.1 68418.m02300 expressed protein contains Pfam profile
PF02598: Uncharacterized ACR, COG2106
Length = 398
Score = 28.7 bits (61), Expect = 4.5
Identities = 9/30 (30%), Positives = 21/30 (70%)
Frame = +1
Query: 40 GLKQRQALEATEMEVEPETIEVVDAKGRKQ 129
G K +++ + +E+E+EPE +++D +K+
Sbjct: 2 GKKNKRSQDESELELEPELTKIIDGDSKKK 31
>At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 354
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +1
Query: 400 LSLFILIGKRVFKKKPPGSKNKVRENCQVYIYFGNCKFY*VTNFPKSVLKIFPKPIC--E 573
L + L + VF ++P + CQ Y+ G+CKF V F + P P C
Sbjct: 208 LGFYALPRENVFPERPG------QPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLS 261
Query: 574 SVSFPHSPQLGACRKFDR 627
SV P P C + R
Sbjct: 262 SVGLPLRPGEPLCVFYSR 279
>At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 375
Score = 28.7 bits (61), Expect = 4.5
Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +1
Query: 400 LSLFILIGKRVFKKKPPGSKNKVRENCQVYIYFGNCKFY*VTNFPKSVLKIFPKPIC--E 573
L + L + VF ++P + CQ Y+ G+CKF V F + P P C
Sbjct: 229 LGFYALPRENVFPERPG------QPECQFYMKTGDCKFGTVCKFHHPRDRQTPPPDCVLS 282
Query: 574 SVSFPHSPQLGACRKFDR 627
SV P P C + R
Sbjct: 283 SVGLPLRPGEPLCVFYSR 300
>At4g39140.4 68417.m05544 expressed protein
Length = 429
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 680 RLRVENSSAA*LS*KSIDRSNFRHAPSW 597
++ V NSSA +++ RSN RH+PSW
Sbjct: 12 KMVVPNSSAG----ENLQRSNIRHSPSW 35
>At4g39140.3 68417.m05543 expressed protein
Length = 429
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 680 RLRVENSSAA*LS*KSIDRSNFRHAPSW 597
++ V NSSA +++ RSN RH+PSW
Sbjct: 12 KMVVPNSSAG----ENLQRSNIRHSPSW 35
>At4g39140.2 68417.m05542 expressed protein
Length = 429
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 680 RLRVENSSAA*LS*KSIDRSNFRHAPSW 597
++ V NSSA +++ RSN RH+PSW
Sbjct: 12 KMVVPNSSAG----ENLQRSNIRHSPSW 35
>At4g39140.1 68417.m05541 expressed protein
Length = 429
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = -3
Query: 680 RLRVENSSAA*LS*KSIDRSNFRHAPSW 597
++ V NSSA +++ RSN RH+PSW
Sbjct: 12 KMVVPNSSAG----ENLQRSNIRHSPSW 35
>At1g76870.1 68414.m08945 hypothetical protein
Length = 385
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +1
Query: 1 VQRDISLIKSPAAGLKQRQALEATEMEVEPETIEV 105
V R ISL AAGL QRQ +E+ +E+E +++
Sbjct: 297 VNRGISLDSRKAAGL-QRQQIESKSLELEGRKLQI 330
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,332,682
Number of Sequences: 28952
Number of extensions: 342280
Number of successful extensions: 787
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1726528800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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