Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30155
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces ...    40   3e-04
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.6  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    26   6.5  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    26   6.5  
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    26   6.5  

>SPAC11E3.12 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
 Frame = +1

Query: 196 SRGFVGHLP*RSQARCHDSLLDLAQRQSGGWIPISAMHKVAEILNLPKMRVYEVATFY-T 372
           ++  +   P R Q+     LLDLAQRQ G WIP +AM+++A +  +    V+ +   Y  
Sbjct: 15  AKAILARYPLRFQSAALVPLLDLAQRQHGTWIPPTAMYEIASLAGVSIDYVHSLILAYPN 74

Query: 373 MFIRRP 390
            F  RP
Sbjct: 75  DFFWRP 80


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -1

Query: 529  KDCCLQPHSLVPCLIAF 479
            K CCL  H++V C++AF
Sbjct: 2886 KGCCLTHHNVVQCMLAF 2902


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = -1

Query: 586 GGSHKLPKHFXLLKRKTFHKDCCLQPHSLVPCLIAFNMASEPRSHKGRGFS 434
           G S   P +    +RK+  KD    P    P  I F+++S+P S  GR  S
Sbjct: 241 GSSPFSPPNAHSRRRKSQGKDQSNTPVIKAPAPIPFSVSSDPPSTMGRSNS 291


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = -3

Query: 656 NFLWNLLQTGPSISKAIIDL*PMGGFTQAPKTFQXSETEN-FPQGLLPPTSQFGSLFNCI 480
           N+L  L+   P+I  AI  + PM    +       S T N + +GL P TS    L    
Sbjct: 258 NYLSQLVGLHPAIPPAIPSMFPMSHDNKKSNMESTSRTRNVYIRGLPPNTSDENLLLYTN 317

Query: 479 QYG-IRASK 456
           ++G + +SK
Sbjct: 318 RFGKVSSSK 326


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 10/36 (27%), Positives = 22/36 (61%)
 Frame = +3

Query: 24  SKKCYPASGLEYRACGVCPLSQFRPQHQGNMTVCLS 131
           +K+ Y A+G+E+ +     ++ F  Q  GN+ +C++
Sbjct: 865 AKEMYGANGVEFSSLAKERINTFIKQGFGNLPICMA 900


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,396,825
Number of Sequences: 5004
Number of extensions: 73207
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)