Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30155
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0024 + 25014274-25014375,25014655-25014720,25015117-250152...    87   2e-17
01_04_0024 - 15175056-15175302,15175373-15175688,15175744-151758...    29   3.9  
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351...    28   6.8  
06_01_0790 - 5905817-5906595,5906722-5907085                           28   9.0  

>05_06_0024 +
           25014274-25014375,25014655-25014720,25015117-25015233,
           25015757-25015834,25015911-25016016,25016150-25016196,
           25016386-25016463,25016898-25016963,25017102-25017165,
           25017406-25017428
          Length = 248

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 52/116 (44%), Positives = 72/116 (62%), Gaps = 3/116 (2%)
 Frame = +1

Query: 253 LLDLAQRQSGGWIPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVLGLNP- 429
           +LDLAQ+Q GGW+P++AM+ +A+I+ +  +RVYEVATFYTMF R  +GKYH+ V G  P 
Sbjct: 76  MLDLAQQQHGGWVPVAAMNAIAKIVEVAPIRVYEVATFYTMFNRTKVGKYHLLVCGTTPC 135

Query: 430 --RGKXPYPCGFEALMPY*MQLNREPNCEVGGNSPCGKFSVSEX*NVLGACVNPPI 591
             RG        EAL+ + + + R    EV  +   G FSV E    +G CVN P+
Sbjct: 136 MIRGSREIE---EALLEH-LGVKRN---EVTSD---GLFSVGEM-ECMGCCVNAPM 180



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/69 (33%), Positives = 42/69 (60%)
 Frame = +2

Query: 47  RTGVQGLWRMSSKSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQAXQKRVEALLAIYPE 226
           R   + L  +++ S   +A+ +  S   H D+PE+NP +P+EF++A  K+V  +L+ YP 
Sbjct: 7   RLAARRLLGLATSSASESAAARRLSRSPHLDSPENNPDMPWEFTEANMKKVNEILSHYPS 66

Query: 227 GHKRGAMIP 253
            +K+  +IP
Sbjct: 67  NYKQSGIIP 75


>01_04_0024 -
           15175056-15175302,15175373-15175688,15175744-15175884,
           15176024-15176526,15177542-15177600
          Length = 421

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 188 QKRVEALLAIYPEGHKRGAMIPYWIWHNDRV 280
           Q+++EA   I    H +GA+    IWHN RV
Sbjct: 154 QEQIEAWRPIVDAVHAKGALFFCQIWHNGRV 184


>10_08_0267 -
           16333239-16333820,16333904-16334842,16334920-16335172,
           16336837-16337063,16338189-16339388
          Length = 1066

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 42  ASGLEYRACGVCPLSQFRPQHQGNMTVCLSTETLQRTTRAFP 167
           A GL+ R CG     Q+R   +G+ T+C +     R+ +  P
Sbjct: 598 AKGLQCRHCGTTETPQWRHGPEGHRTLCNACSMRYRSGKLVP 639


>06_01_0790 - 5905817-5906595,5906722-5907085
          Length = 380

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 137 DTPEDNPSIPFEFSQAXQKRVEALLAIYPEGHKRGAMIPYWIWHNDRV 280
           DT +  P  P  ++Q   ++VEA   I    H++GA+    +WH  RV
Sbjct: 74  DTAQGYPDTPGIWTQ---QQVEAWKPIVDAVHRKGALFICQLWHVGRV 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,823,824
Number of Sequences: 37544
Number of extensions: 545954
Number of successful extensions: 1111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1111
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)