Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30155
(742 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24599| Best HMM Match : Complex1_24kDa (HMM E-Value=0) 101 6e-22
SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_46398| Best HMM Match : LT-IIB (HMM E-Value=7) 30 2.3
SB_1550| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 5.2
SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07) 29 5.2
SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_30884| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.8e-33) 29 5.2
SB_8160| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_36608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
>SB_24599| Best HMM Match : Complex1_24kDa (HMM E-Value=0)
Length = 487
Score = 101 bits (242), Expect = 6e-22
Identities = 58/134 (43%), Positives = 75/134 (55%)
Frame = +1
Query: 190 KESRGFVGHLP*RSQARCHDSLLDLAQRQSGGWIPISAMHKVAEILNLPKMRVYEVATFY 369
K ++ + + P + LLDLAQRQ GW+PISAM+ VA+ LN+P+MRVYEVATFY
Sbjct: 43 KRAKSILNNYPTGHEKAAVIPLLDLAQRQHDGWLPISAMNYVADFLNMPRMRVYEVATFY 102
Query: 370 TMFIRRPIGKYHVQVLGLNPRGKXPYPCGFEALMPY*MQLNREPNCEVGGNSPCGKFSVS 549
TMF R P+GKYHVQV PC L + + G S G F+++
Sbjct: 103 TMFNREPVGKYHVQVCTTT-------PCQLRNADDLLDTLKSKLGIKEGETSKDGMFTLT 155
Query: 550 EX*NVLGACVNPPI 591
LGACVN P+
Sbjct: 156 VV-ECLGACVNAPM 168
Score = 54.8 bits (126), Expect = 7e-08
Identities = 27/70 (38%), Positives = 44/70 (62%)
Frame = +2
Query: 44 LRTGVQGLWRMSSKSIQTTASRQHDSLFVHRDTPEDNPSIPFEFSQAXQKRVEALLAIYP 223
L + L R+S+ S++++A HRDT +NP +PFEF++A KR +++L YP
Sbjct: 2 LSRALMQLGRISAASVRSSAQ--------HRDTDGNNPDLPFEFNEANLKRAKSILNNYP 53
Query: 224 EGHKRGAMIP 253
GH++ A+IP
Sbjct: 54 TGHEKAAVIP 63
>SB_6883| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 5/59 (8%)
Frame = +3
Query: 36 YPASGLEYRACGVCPLSQFRPQHQGNMTVC-----LSTETLQRTTRAFPLSSRRPXKRE 197
Y G++Y C CP FR Q G T+C S ET+ + L SR K E
Sbjct: 582 YKVIGIDYEPCTSCPPGYFRLQRFGECTLCPIGYECSNETVNLRKDFYWLWSREDSKIE 640
>SB_46398| Best HMM Match : LT-IIB (HMM E-Value=7)
Length = 104
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = +2
Query: 149 DNPSIPFEFSQAXQKRVEALLAIYPEGHKRGAMIPYWIWHNDRVEAGYRSQL 304
D P + + K+ +L+ +G+ + P WIW N+ +EAG Q+
Sbjct: 40 DPPKNIYGKERNVHKQKSSLIVQDFKGNGTSSQSPAWIWANNDIEAGINKQI 91
>SB_1550| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 931
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 4/19 (21%)
Frame = +2
Query: 251 PYWIWHN----DRVEAGYR 295
PYW W N DRVE GYR
Sbjct: 777 PYWTWDNFQVMDRVEGGYR 795
>SB_58219| Best HMM Match : SOCS_box (HMM E-Value=2e-07)
Length = 507
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 17 NTIKKMLSSLRTGVQGLWR---MSSKSIQTTASRQHDSLFVHRDTPED 151
NT++++ SSL+T W MSSK + Q D F+ RD+ D
Sbjct: 328 NTVRRLSSSLKTLSNCGWYWGPMSSKEAEKELYNQPDGCFLVRDSEND 375
>SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 4/19 (21%)
Frame = +2
Query: 251 PYWIWHN----DRVEAGYR 295
PYW W N DRVE GYR
Sbjct: 272 PYWTWDNFQVMDRVEGGYR 290
>SB_30884| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.8e-33)
Length = 308
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/19 (63%), Positives = 12/19 (63%), Gaps = 4/19 (21%)
Frame = +2
Query: 251 PYWIWHN----DRVEAGYR 295
PYW W N DRVE GYR
Sbjct: 94 PYWTWDNFQVMDRVEGGYR 112
>SB_8160| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 516
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 56 VQGLWRMSSKSIQTTASRQHDSLFVHRDTPEDNPSIPF 169
VQ LW ++ + +T+ ++ DSLF E+NPS F
Sbjct: 476 VQSLWFVNQSRVASTSGKEDDSLF-----GEENPSTTF 508
>SB_36608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 45 SGLEYRACGVCPLSQFRPQHQGNMTVCLSTETLQRTTRAFPLSSR 179
+GL C + + R QH GN+ ++ + R+T A S++
Sbjct: 23 NGLSVNVCSIATSAHTRTQHTGNLPASITPQRRLRSTTAVDGSNK 67
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,087,771
Number of Sequences: 59808
Number of extensions: 580117
Number of successful extensions: 1161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1019
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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