Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30155
         (742 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02580.1 68417.m00352 NADH-ubiquinone oxidoreductase 24 kDa s...    87   2e-17
At5g13200.1 68418.m01512 GRAM domain-containing protein / ABA-re...    31   1.1  
At4g26130.1 68417.m03761 expressed protein                             30   1.9  
At1g02950.2 68414.m00263 glutathione S-transferase, putative sim...    29   4.3  
At1g02950.1 68414.m00262 glutathione S-transferase, putative sim...    29   4.3  
At3g32904.1 68416.m04164 hypothetical protein                          28   7.5  
At5g25140.1 68418.m02979 cytochrome P450 family protein CYTOCHRO...    27   9.9  
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR...    27   9.9  

>At4g02580.1 68417.m00352 NADH-ubiquinone oxidoreductase 24 kDa
           subunit, putative similar to NADH-ubiquinone
           oxidoreductase 24 kDa subunit, mitochondrial precursor
           (EC 1.6.5.3) (EC 1.6.99.3) (Polypeptide II)
           (Swiss-Prot:P04394) [Bos taurus]
          Length = 255

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 48/113 (42%), Positives = 65/113 (57%)
 Frame = +1

Query: 253 LLDLAQRQSGGWIPISAMHKVAEILNLPKMRVYEVATFYTMFIRRPIGKYHVQVLGLNPR 432
           LLDLAQ+Q+GGW+P+SAM+ VA+++ +  +RVYEVATFY+MF R  +GKYH+ V G    
Sbjct: 76  LLDLAQQQNGGWLPVSAMNAVAKVIEVAPIRVYEVATFYSMFNRAKVGKYHLLVCGTT-- 133

Query: 433 GKXPYPCGFEALMPY*MQLNREPNCEVGGNSPCGKFSVSEX*NVLGACVNPPI 591
                PC           L      + G  +  G FSV E    +G CVN P+
Sbjct: 134 -----PCMIRGSRDIESALLDHLGVKRGEVTKDGLFSVGEM-ECMGCCVNAPM 180



 Score = 50.8 bits (116), Expect = 9e-07
 Identities = 19/45 (42%), Positives = 33/45 (73%)
 Frame = +2

Query: 119 SLFVHRDTPEDNPSIPFEFSQAXQKRVEALLAIYPEGHKRGAMIP 253
           +L  H D+P++ P +P+EFS+A Q +V+ +L+ YP  +K+ A+IP
Sbjct: 31  ALNYHLDSPDNKPDLPWEFSEANQSKVKEILSYYPSNYKQSAVIP 75


>At5g13200.1 68418.m01512 GRAM domain-containing protein /
           ABA-responsive protein-related similar to ABA-responsive
           protein [Hordeum vulgare] GI:4103635; contains Pfam
           profile PF02893: GRAM domain
          Length = 272

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/41 (43%), Positives = 25/41 (60%)
 Frame = -3

Query: 734 PGEAQTGIFHFWAQVWVSRPSLKLAENFLWNLLQTGPSISK 612
           P E   G+FH W     SR +  +A N LW+ L+TGPS+S+
Sbjct: 89  PLEPVIGMFHTW-----SRKAETVARN-LWHNLKTGPSMSE 123


>At4g26130.1 68417.m03761 expressed protein
          Length = 286

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 739 NPPERLRRESSTSGPRFGFPALL*NWRKISFGTFYRRVP 623
           +P +++  +  T+ PRFG P+LL   + I   + YR  P
Sbjct: 140 DPIDKIPEDDVTTEPRFGAPSLLQRVKSIKLPSLYRSDP 178


>At1g02950.2 68414.m00263 glutathione S-transferase, putative
           similar to glutathione-S-transferase GI:169887 from
           [Silene vulgaris]
          Length = 245

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 260 SSKESWHLACDLQGKWPTKP 201
           +S+E+W +ACD +  W  KP
Sbjct: 224 TSREAWKMACDQEKSWFNKP 243


>At1g02950.1 68414.m00262 glutathione S-transferase, putative
           similar to glutathione-S-transferase GI:169887 from
           [Silene vulgaris]
          Length = 243

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 260 SSKESWHLACDLQGKWPTKP 201
           +S+E+W +ACD +  W  KP
Sbjct: 222 TSREAWKMACDQEKSWFNKP 241


>At3g32904.1 68416.m04164 hypothetical protein 
          Length = 330

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 5/90 (5%)
 Frame = -3

Query: 704 FWAQVWVSRPSLKLAENFLWNLLQTGPSISKAIIDL*PMG-GFTQ---APKTFQXSETEN 537
           FW + +++R    + +N  +    T  +     +     G GF Q    P   Q +   N
Sbjct: 232 FWRKYFINRAERTVEDNLKFLQALTRDTRDNEYVGKRQWGHGFQQWGTPPTAPQWNSPSN 291

Query: 536 FPQGLLPPTS-QFGSLFNCIQYGIRASKPQ 450
            PQ  +PPT+ Q+G+  +  Q+    + PQ
Sbjct: 292 VPQWTIPPTTPQWGTPSSMPQWSSSPTAPQ 321


>At5g25140.1 68418.m02979 cytochrome P450 family protein CYTOCHROME
           P450 71B1 - Thlaspi arvense, EMBL:L24438
          Length = 496

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 541 KTFHKDCCLQPHSLVPCLIAFNM 473
           KTF KDCC +     P  I++N+
Sbjct: 87  KTFDKDCCSRAFLTYPARISYNL 109


>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1103

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +3

Query: 48  GLEYRAC-GVCPLSQFRPQHQGNMTV 122
           GL+Y  C   C  S+FRP+H  N+TV
Sbjct: 716 GLDYLDCLRRCNPSKFRPEHLKNLTV 741


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,519,057
Number of Sequences: 28952
Number of extensions: 416971
Number of successful extensions: 868
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)