Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30154
         (459 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    28   0.79 
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    28   0.79 
SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo...    26   2.4  
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   9.7  

>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 27.9 bits (59), Expect = 0.79
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = -2

Query: 365 LSVNTLVALRRLNDDVFQVPRCPASPAWGAFRRCSEAG 252
           LS + L ALRR ++ + QV RCP S     +  C E+G
Sbjct: 21  LSRSPLTALRRRSEHIKQVYRCPISGKSVEY-ECPESG 57


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 27.9 bits (59), Expect = 0.79
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = +1

Query: 55  KISLFYVIKQKKVMMC*LVHSFRNTVT*NFVGSLSQSVLIKEVQCVRFC 201
           ++S F   +Q+KV +   +H F +T     +G++   +   E QC++ C
Sbjct: 19  ELSKFIESEQQKVKLQQAIHQFTSTCWPKCIGNIGNKLDKSEEQCLQNC 67


>SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase
           YakC|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 340

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
 Frame = -2

Query: 398 GDRILQRFPRFLSVNTLVALRRLNDD---VFQVPR----CPASPAWGAFRRCSEAGRV*G 240
           G+  L   P ++     ++L+RL  D   ++ V R     P     GA ++C EAG++  
Sbjct: 93  GELSLNNEPDYIEKALDLSLKRLGIDCIDLYYVHRFSGETPIEKIMGALKKCVEAGKI-- 150

Query: 239 RVLGETDC 216
           R +G ++C
Sbjct: 151 RYIGLSEC 158


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = -3

Query: 175 LLKHSEKENQQNFTSLYYENYALISTSSLFF 83
           LL  + K N  NF    Y NY ++  SSLFF
Sbjct: 74  LLSSAHKMNCCNF----YSNYNILLVSSLFF 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,806,219
Number of Sequences: 5004
Number of extensions: 32218
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)