Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30154
(459 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0191 - 1669631-1669924 30 1.0
12_02_0818 - 23427625-23429022 29 1.4
11_04_0068 - 13116037-13116414,13116501-13116947,13117026-131177... 29 1.8
03_05_0500 + 24942047-24942541 29 1.8
01_02_0124 - 11365092-11365340 29 2.4
02_01_0640 + 4796079-4797032,4797269-4797934 28 4.2
11_04_0473 + 18156314-18156388,18157255-18157356,18157714-18157983 27 5.5
08_01_0991 + 10030636-10031064,10031209-10031364,10031443-100315... 27 5.5
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910... 27 5.5
01_03_0288 - 14714953-14715253,14716317-14716402,14716573-147166... 27 5.5
10_08_0354 - 17104223-17106061,17106770-17106794,17107317-171075... 27 9.6
>01_01_0191 - 1669631-1669924
Length = 97
Score = 29.9 bits (64), Expect = 1.0
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 449 FFPPTPFQLVSLLHKIVGDR-ILQRFPRFLSVNTLVALRRLNDDVFQVPRCP 297
F PTP +L S VG R + PR+ S + A R DD ++P CP
Sbjct: 40 FQAPTPARLSSGSSYAVGSRPVPAAAPRWSSSSASEAAARFADDKRRIPSCP 91
>12_02_0818 - 23427625-23429022
Length = 465
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = -2
Query: 341 LRRLNDDVFQVPRCPASPAWGAFRRCSEAGRV*GRVLGETDCYQHRQQKRTHCTSFIKTL 162
LRRL DD+ PA R S G + G+ + R++K+ H +SF+ L
Sbjct: 12 LRRLPDDLVADEILTRLPARSLARFASVCGAWRAAISGDPSSFLRRRRKKEHSSSFLLLL 71
>11_04_0068 -
13116037-13116414,13116501-13116947,13117026-13117757,
13118235-13118348
Length = 556
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = -2
Query: 392 RILQRFPRFLSVNTLVALRRLNDDVFQVPRCPASPAWGAFR 270
+IL RF V L L DD+ QVP AW AF+
Sbjct: 87 KILSRFRSICGVIGRQKLSILQDDIKQVPAAEKDSAWLAFK 127
>03_05_0500 + 24942047-24942541
Length = 164
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -3
Query: 340 SVGLTMMSSRFPGARLRRR-GGRSEDVQKQAGSKVVSWARQTVTSTASKS 194
+V + + + FPG R R+R R +DV++ G+ + Q + A K+
Sbjct: 19 AVVVVLAAGAFPGGRWRKRAAARVDDVERALGAATLMTYEQAAAAAAKKA 68
>01_02_0124 - 11365092-11365340
Length = 82
Score = 28.7 bits (61), Expect = 2.4
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 308 PRCPASPAWGAFRRCSEAGRV*GRVLGETDCYQHRQQKR 192
P P GAFRRCS GRV G + C+ + KR
Sbjct: 9 PSTSTPPPPGAFRRCS--GRVRGAGISCAGCFGDAESKR 45
>02_01_0640 + 4796079-4797032,4797269-4797934
Length = 539
Score = 27.9 bits (59), Expect = 4.2
Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Frame = -2
Query: 443 PPTPFQL--VSLLHKIVGDRILQR 378
PP P++L + LH +VGDR+L R
Sbjct: 41 PPGPWRLPVIGSLHHVVGDRLLHR 64
>11_04_0473 + 18156314-18156388,18157255-18157356,18157714-18157983
Length = 148
Score = 27.5 bits (58), Expect = 5.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 307 GTWKTSSLSLRRATSVFTDKKRGNLCKMRSP 399
G+WK S +S R S+ T R L +RSP
Sbjct: 22 GSWKGSRISSRNLVSMKTMTARRGLVSLRSP 52
>08_01_0991 +
10030636-10031064,10031209-10031364,10031443-10031554,
10031710-10031876,10031962-10032848,10032927-10032987,
10033009-10033097,10033180-10033468,10033520-10033564
Length = 744
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = -2
Query: 392 RILQRFPRFLSVNTLVALRRLNDDVFQVPRCPASPAWGAFRR 267
+IL RF V L DD+ QVP AW AF++
Sbjct: 48 KILSRFRSICGVIGGQKFSILQDDIKQVPAAEKDSAWLAFKK 89
>04_04_0996 +
29990255-29990425,29990797-29990841,29991024-29991098,
29991481-29991691,29992057-29992442,29993202-29993425,
29993529-29993664,29993699-29993761,29993842-29994021
Length = 496
Score = 27.5 bits (58), Expect = 5.5
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = -2
Query: 455 GGFFPPTPFQLVSLLHKIVGDRILQRFPRFLSVNTLVALRRLNDDVFQVPRCPAS 291
GG PP SLL +++GD +R+ R + TL ++ D+ PRC A+
Sbjct: 209 GGIIPP------SLLKRLLGDTDFERWERLILQKTLDSM----SDLAYCPRCGAA 253
>01_03_0288 -
14714953-14715253,14716317-14716402,14716573-14716686,
14716771-14717140,14717224-14717357,14717512-14717617,
14717733-14717854,14718125-14718231,14718522-14718622,
14719007-14719169,14719559-14719614,14720833-14721152
Length = 659
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +1
Query: 220 SVSPRTRP*TLPASEHLRNAPHAGEAGHRGTWKTSSLSLRR 342
+ +PR RP L AS AP +GE G T + S +RR
Sbjct: 15 AATPRRRPTRLRASS--TEAPASGEKGQEDTDRKSGTGMRR 53
>10_08_0354 -
17104223-17106061,17106770-17106794,17107317-17107561,
17108432-17108677
Length = 784
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = -3
Query: 352 RLLLSVGLTMM-SSRFPGARLRRRGGRSEDVQ 260
R+L++ G + ++R G RLR +G R EDV+
Sbjct: 640 RILVAAGAAEVGTNRSDGLRLRCKGARDEDVE 671
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,927,228
Number of Sequences: 37544
Number of extensions: 220767
Number of successful extensions: 563
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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