Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30154
         (459 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24951| Best HMM Match : Glyco_tran_28_C (HMM E-Value=2.5)           28   4.3  
SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)                 27   5.6  
SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               27   5.6  
SB_45726| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  
SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)                   27   7.5  
SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)                 27   7.5  
SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.5  

>SB_24951| Best HMM Match : Glyco_tran_28_C (HMM E-Value=2.5)
          Length = 125

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/27 (40%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -2

Query: 446 FPP-TPFQLVSLLHKIVGDRILQRFPR 369
           FPP  P    S L+ ++GDR+ + FP+
Sbjct: 81  FPPGRPITFGSYLNSVMGDRVFEAFPK 107


>SB_48964| Best HMM Match : TRAP_240kDa (HMM E-Value=0)
          Length = 1227

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 22/60 (36%), Positives = 26/60 (43%)
 Frame = -2

Query: 452  GFFPPTPFQLVSLLHKIVGDRILQRFPRFLSVNTLVALRRLNDDVFQVPRCPASPAWGAF 273
            GF PP P  L S  H  V   +LQRF   LS  T+  + R       V  C  S  + AF
Sbjct: 856  GFPPPPPHALTSQTHCDVLRYVLQRFDA-LSWLTVDPVSRDRRSCLPVHLCILSQLYDAF 914


>SB_22849| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1359

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -2

Query: 458 PGGFFPPTPFQLVSLLHKIVGDRILQRFPRFLSVNTLVALRRLND-DVFQVPRCPASPAW 282
           PG        ++ SL  K+  DRI +R  RF       AL+ LND D+ +     A   W
Sbjct: 418 PGSVKKTVDERVNSLRDKV--DRIFKRVERFAPKEKQTALKGLNDTDISEEDYQHAREVW 475

Query: 281 GAF 273
            AF
Sbjct: 476 EAF 478


>SB_45726| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 250 GSKVVSWARQTVTSTASKSERIALLLLKHSEKENQQNFTSL 128
           G+K +SW +   T  A K  ++AL  L H   ++Q   ++L
Sbjct: 67  GTKSLSWEQYQQTKAAPKPTKMALAFLDHIYTKDQLKNSTL 107


>SB_18951| Best HMM Match : EGF (HMM E-Value=2.1e-06)
          Length = 1223

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 217 QSVSPRTRP*TLPASEHLRNAPHAGEAGHRGTWKTSSLSLRRATS 351
           + V PR+R  +  +S H R +   G  G RG  ++ S S  R+ S
Sbjct: 4   EEVKPRSRTSSSSSSNHSRRSRSRGSNGSRGKAQSPSGSRSRSRS 48


>SB_38612| Best HMM Match : TSP_1 (HMM E-Value=3.3e-11)
          Length = 900

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = +2

Query: 335 YGEQQACLRIRNGGIFAKCGPLLFCVTKKPIERGLGG 445
           Y   + C +++ G  + +C P L+C+  + ++ GL G
Sbjct: 325 YDRNKQC-QMQYGSTYRQCEPKLWCIAGECVDDGLSG 360


>SB_11402| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 753

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 250 GSKVVSWARQTVTSTASKSERIALLLLKHSEKENQQNFTSL 128
           G+K +SW +   T  A K  ++AL  L H   ++Q   ++L
Sbjct: 134 GTKSLSWKQYQQTKAAPKPTKMALAFLDHIYTKDQLKNSTL 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,733,852
Number of Sequences: 59808
Number of extensions: 245590
Number of successful extensions: 594
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 581
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 594
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)