Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30154
         (459 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L42762-1|AAB36617.1|  887|Drosophila melanogaster DNA replicatio...    33   0.14 
AY069702-1|AAL39847.1|  887|Drosophila melanogaster LD47441p pro...    33   0.14 
AE014297-720|AAF54207.1|  887|Drosophila melanogaster CG7538-PA ...    33   0.14 
AY061100-1|AAL28648.1|  521|Drosophila melanogaster LD08906p pro...    28   6.9  
AY051460-1|AAK92884.1| 1022|Drosophila melanogaster GH13214p pro...    28   6.9  
AE014298-1198|AAF46388.1| 1022|Drosophila melanogaster CG12113-P...    28   6.9  
AE014297-2753|AAF55737.1|  521|Drosophila melanogaster CG4936-PA...    28   6.9  

>L42762-1|AAB36617.1|  887|Drosophila melanogaster DNA replication
           licensing factor protein.
          Length = 887

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 449 FFPPTPFQLVSLLHKIVGDRILQRFPRFLSVNTLVALR 336
           F P  PFQ++ +  K+  D +L  FP +  V T + +R
Sbjct: 232 FLPEAPFQMLEIFDKVAKDMVLSIFPTYERVTTEIHVR 269


>AY069702-1|AAL39847.1|  887|Drosophila melanogaster LD47441p
           protein.
          Length = 887

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 449 FFPPTPFQLVSLLHKIVGDRILQRFPRFLSVNTLVALR 336
           F P  PFQ++ +  K+  D +L  FP +  V T + +R
Sbjct: 232 FLPEAPFQMLEIFDKVAKDMVLSIFPTYERVTTEIHVR 269


>AE014297-720|AAF54207.1|  887|Drosophila melanogaster CG7538-PA
           protein.
          Length = 887

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 449 FFPPTPFQLVSLLHKIVGDRILQRFPRFLSVNTLVALR 336
           F P  PFQ++ +  K+  D +L  FP +  V T + +R
Sbjct: 232 FLPEAPFQMLEIFDKVAKDMVLSIFPTYERVTTEIHVR 269


>AY061100-1|AAL28648.1|  521|Drosophila melanogaster LD08906p
           protein.
          Length = 521

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 256 ASEHLRNAPHAGEAGHRGTWKTSSLSLRRATSVFTDKKRGNLCKMR 393
           AS H RNA        R    T+S+++  +TS  TD  RGN  K+R
Sbjct: 267 ASIHARNATKRRVNPRRSATSTASVAVESSTSKTTD--RGNPLKVR 310


>AY051460-1|AAK92884.1| 1022|Drosophila melanogaster GH13214p protein.
          Length = 1022

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 341  EQQACLRIRNGGIFAKCGPLLFCVTKKPIERGL 439
            E Q CL +R G     C P       KP+ RG+
Sbjct: 990  EIQLCLAVRPGSELELCKPAKVLFAPKPVRRGI 1022


>AE014298-1198|AAF46388.1| 1022|Drosophila melanogaster CG12113-PA
            protein.
          Length = 1022

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 341  EQQACLRIRNGGIFAKCGPLLFCVTKKPIERGL 439
            E Q CL +R G     C P       KP+ RG+
Sbjct: 990  EIQLCLAVRPGSELELCKPAKVLFAPKPVRRGI 1022


>AE014297-2753|AAF55737.1|  521|Drosophila melanogaster CG4936-PA
           protein.
          Length = 521

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 256 ASEHLRNAPHAGEAGHRGTWKTSSLSLRRATSVFTDKKRGNLCKMR 393
           AS H RNA        R    T+S+++  +TS  TD  RGN  K+R
Sbjct: 267 ASIHARNATKRRVNPRRSATSTASVAVESSTSKTTD--RGNPLKVR 310


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,755,287
Number of Sequences: 53049
Number of extensions: 362904
Number of successful extensions: 838
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 838
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1518217281
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)