Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30154
         (459 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81071-6|CAB03010.1|  464|Caenorhabditis elegans Hypothetical pr...    27   6.6  
CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical ...    27   8.7  
AC084159-15|AAK39353.1|  418|Caenorhabditis elegans Hypothetical...    27   8.7  

>Z81071-6|CAB03010.1|  464|Caenorhabditis elegans Hypothetical
           protein F28F8.7 protein.
          Length = 464

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
 Frame = -3

Query: 331 LTMMSSRFPGARLRRRGGRSEDVQKQAGSKVVSW--ARQTVTSTASKSERIALLLLKHSE 158
           L ++ S + G     R  ++    K+  +KV+SW    +T + + S+ E   +  LK SE
Sbjct: 321 LCLICSTYQGITGNTRPSKATVFSKEEANKVISWNTLMRTSSGSLSREEFEKIYALKRSE 380

Query: 157 KENQQ 143
              ++
Sbjct: 381 LTKEE 385


>CU457741-4|CAM36345.1| 1259|Caenorhabditis elegans Hypothetical
           protein C42C1.4a protein.
          Length = 1259

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -3

Query: 283 GGRSEDVQKQAGSKVVSWARQTVTSTASKSERIALLL---LKHSEKENQQNFTSLYYENY 113
           GGR  +  K           Q+VTS  S SER+ +L    LK+ EK ++      Y E  
Sbjct: 398 GGRVSEAVKAVAEFA---CYQSVTSATSTSERLIVLAHDGLKYLEKVHEWEQLERYKERN 454

Query: 112 ALISTS 95
            +IS S
Sbjct: 455 DVISAS 460


>AC084159-15|AAK39353.1|  418|Caenorhabditis elegans Hypothetical
           protein Y73B3A.13 protein.
          Length = 418

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -3

Query: 331 LTMMSSRFPGARLRRRGGRSEDVQKQAGSKVVSW--ARQTVTSTASKSERIALLLLKHSE 158
           L ++ S + G     R  ++    K+   KV+SW    +T + + S+ E   +  LK SE
Sbjct: 300 LCLICSTYQGITGNTRPSKATVFSKEEAKKVISWNTLMRTSSGSLSREEFEKIYALKRSE 359

Query: 157 KENQQ 143
              ++
Sbjct: 360 LTKEE 364


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,234,863
Number of Sequences: 27780
Number of extensions: 189250
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)