Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30154
         (459 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    25   0.52 
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    25   0.52 
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    25   0.52 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    22   3.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   8.5  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 166 HSEKENQQNFTSLYYENYALISTSSLFFV*LR-KIRIFFLGIFNEMF 29
           H E + +QN  SL  EN+ +   + + F  +R K       + NE+F
Sbjct: 34  HQEMQGKQNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVKNELF 80


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 166 HSEKENQQNFTSLYYENYALISTSSLFFV*LR-KIRIFFLGIFNEMF 29
           H E + +QN  SL  EN+ +   + + F  +R K       + NE+F
Sbjct: 34  HQEMQGKQNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVKNELF 80


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 24.6 bits (51), Expect = 0.52
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -3

Query: 166 HSEKENQQNFTSLYYENYALISTSSLFFV*LR-KIRIFFLGIFNEMF 29
           H E + +QN  SL  EN+ +   + + F  +R K       + NE+F
Sbjct: 34  HQEMQGKQNSASLNSENFGIFKRALMGFQGVRGKKNSIINDVKNELF 80


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 375 PPFLIRKHAC 346
           PPFL++ H+C
Sbjct: 44  PPFLVQLHSC 53


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 11/41 (26%), Positives = 20/41 (48%)
 Frame = -3

Query: 220 TVTSTASKSERIALLLLKHSEKENQQNFTSLYYENYALIST 98
           TVT+  +    I ++L+ H      ++  + Y  +Y  IST
Sbjct: 143 TVTTILAAIVGIVMVLIIHPGDPRIKSVVTAYKADYTKIST 183


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,494
Number of Sequences: 438
Number of extensions: 2346
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12189771
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)