Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30154
         (459 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g59660.1 68414.m06710 nucleoporin family protein contains Pfa...    31   0.49 
At1g76480.1 68414.m08897 expressed protein  ; expression support...    27   4.6  
At5g58330.3 68418.m07302 malate dehydrogenase [NADP], chloroplas...    27   6.1  
At5g58330.2 68418.m07304 malate dehydrogenase [NADP], chloroplas...    27   6.1  
At5g58330.1 68418.m07303 malate dehydrogenase [NADP], chloroplas...    27   6.1  
At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding ...    27   6.1  

>At1g59660.1 68414.m06710 nucleoporin family protein contains Pfam
           profiles: PF04096 nucleoporin autopeptidase, PF03093
           nucleoporin FG repeat family
          Length = 997

 Score = 30.7 bits (66), Expect = 0.49
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
 Frame = -3

Query: 283 GGRSEDVQKQAGSKVVSWA--RQTVTSTASKSERIALLLLKHSEKENQQNFTSLYYENY 113
           GG+S    +Q GS+V+ +A    T + T SKSER+  +    + K   +N   L +E+Y
Sbjct: 325 GGQSTIGGQQGGSRVIPYAPTTDTASGTESKSERLQSISAMPAHK--GKNMEELRWEDY 381


>At1g76480.1 68414.m08897 expressed protein  ; expression supported
           by MPSS
          Length = 177

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -3

Query: 265 VQKQAGSKVVSWARQTVTSTASKSERIALLLLKHSEKENQQN 140
           V K  G K  SW    ++  AS   R++L LLK+ E E + N
Sbjct: 26  VYKLQGLKSNSWYEVKISYPASIPARVSLQLLKNHEMELKLN 67


>At5g58330.3 68418.m07302 malate dehydrogenase [NADP], chloroplast,
           putative strong similiarity to chloroplast
           NADP-dependent malate dehydrogenase (EC 1.1.1.82)
           SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
           SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
           {Flaveria bidentis}, [Flaveria trinervia] GI:726334,
           SP|P17606I {Sorghum bicolor}; contains InterPro entry
           IPR001236: Lactate/malate dehydrogenase
          Length = 334

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 280 GRSEDVQKQAGSKVVSWARQTVTSTA 203
           G +E VQK+ G  +  W R +  STA
Sbjct: 204 GFTESVQKRGGLLIQKWGRSSAASTA 229


>At5g58330.2 68418.m07304 malate dehydrogenase [NADP], chloroplast,
           putative strong similiarity to chloroplast
           NADP-dependent malate dehydrogenase (EC 1.1.1.82)
           SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
           SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
           {Flaveria bidentis}, [Flaveria trinervia] GI:726334,
           SP|P17606I {Sorghum bicolor}; contains InterPro entry
           IPR001236: Lactate/malate dehydrogenase
          Length = 442

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 280 GRSEDVQKQAGSKVVSWARQTVTSTA 203
           G +E VQK+ G  +  W R +  STA
Sbjct: 312 GFTESVQKRGGLLIQKWGRSSAASTA 337


>At5g58330.1 68418.m07303 malate dehydrogenase [NADP], chloroplast,
           putative strong similiarity to chloroplast
           NADP-dependent malate dehydrogenase (EC 1.1.1.82)
           SP|O48902 {Medicago sativa}, SP|P21528 {Pisum sativum},
           SP|Q05145 {Mesembryanthemum crystallinum}, SP|P46489
           {Flaveria bidentis}, [Flaveria trinervia] GI:726334,
           SP|P17606I {Sorghum bicolor}; contains InterPro entry
           IPR001236: Lactate/malate dehydrogenase
          Length = 443

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 280 GRSEDVQKQAGSKVVSWARQTVTSTA 203
           G +E VQK+ G  +  W R +  STA
Sbjct: 313 GFTESVQKRGGLLIQKWGRSSAASTA 338


>At5g51070.1 68418.m06330 ATP-dependent Clp protease ATP-binding
           subunit (ClpD), (ERD1) SAG15/ERD1; identical to ERD1
           protein GI:497629, SP:P42762 from [Arabidopsis
           thaliana]; contains Pfam profile PF02861: Clp amino
           terminal domain
          Length = 945

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -2

Query: 392 RILQRFPRFLSVNTLVALRRLNDDVFQVPRCPASPAWGAFRRCSEAGRV*G 240
           R+L+R    +++ T  AL RL  ++ +  R P+S + G+F     +GR+ G
Sbjct: 210 RVLKRLGANMNLLTAAALTRLKGEIAKDGREPSSSSKGSF-ESPPSGRIAG 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,566,369
Number of Sequences: 28952
Number of extensions: 174615
Number of successful extensions: 421
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 762235320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)