Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30152
(452 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P49207 Cluster: 60S ribosomal protein L34; n=62; Fungi/... 87 1e-16
UniRef50_Q6E6C0 Cluster: Large subunit ribosomal protein L34e; n... 82 5e-15
UniRef50_Q42351 Cluster: 60S ribosomal protein L34-1; n=29; Euka... 80 3e-14
UniRef50_P87262 Cluster: 60S ribosomal protein L34-A; n=55; Euka... 78 1e-13
UniRef50_Q5CVM8 Cluster: 60S ribosomal protein L34; n=2; Cryptos... 74 1e-12
UniRef50_A7AVD9 Cluster: Ribosomal protein L34, putative; n=1; B... 73 2e-12
UniRef50_Q4MZM9 Cluster: 60S ribosomal protein L34a, putative; n... 72 5e-12
UniRef50_Q7RF49 Cluster: Ribosomal protein L34e, putative; n=5; ... 71 1e-11
UniRef50_Q4WI54 Cluster: Ribosomal protein L34 protein, putative... 71 1e-11
UniRef50_A0D0J3 Cluster: Chromosome undetermined scaffold_33, wh... 63 3e-09
UniRef50_UPI000049A50B Cluster: 60S ribosomal protein L34; n=3; ... 62 7e-09
UniRef50_Q8SSA2 Cluster: 60S ribosomal protein L34; n=1; Encepha... 57 2e-07
UniRef50_A2DT99 Cluster: Ribosomal protein L34e, putative; n=3; ... 52 4e-06
UniRef50_Q9UZJ7 Cluster: 50S ribosomal protein L34e; n=8; Archae... 52 4e-06
UniRef50_O14396 Cluster: Putative uncharacterized protein; n=1; ... 46 4e-04
UniRef50_Q17JY6 Cluster: Ribosomal protein L34, putative; n=1; A... 45 9e-04
UniRef50_Q8TZB2 Cluster: 50S ribosomal protein L34e; n=3; Archae... 45 9e-04
UniRef50_Q4Q141 Cluster: 60S ribosomal protein L34, putative; n=... 44 0.001
UniRef50_O26137 Cluster: 50S ribosomal protein L34e; n=3; Methan... 43 0.003
UniRef50_A1RXV1 Cluster: Ribosomal protein L34e; n=1; Thermofilu... 42 0.006
UniRef50_Q8ZTJ2 Cluster: 50S ribosomal protein L34e; n=3; Pyroba... 39 0.058
UniRef50_P58026 Cluster: 50S ribosomal protein L34e; n=4; Thermo... 38 0.10
UniRef50_Q3LW25 Cluster: Ribosomal protein L34; n=1; Bigelowiell... 36 0.54
UniRef50_Q6LZK0 Cluster: Ribosomal protein L34e; n=5; Methanococ... 34 1.6
UniRef50_UPI000069E55B Cluster: Lymphocyte antigen 75 precursor ... 33 3.8
UniRef50_UPI00003AD95B Cluster: PREDICTED: hypothetical protein;... 32 6.6
>UniRef50_P49207 Cluster: 60S ribosomal protein L34; n=62;
Fungi/Metazoa group|Rep: 60S ribosomal protein L34 -
Homo sapiens (Human)
Length = 117
Score = 87.4 bits (207), Expect = 1e-16
Identities = 43/76 (56%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR--CGQCKSKLRGIQPAR 207
MVQRLT+RRRLSYNT SN+ R+ RTPG R+VY Y KK K P+ CG C +LRG++ R
Sbjct: 1 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR 60
Query: 208 PAERSRLCYRKKTVKR 255
P RL KK V R
Sbjct: 61 PKVLMRLSKTKKHVSR 76
Score = 46.8 bits (106), Expect = 2e-04
Identities = 23/30 (76%), Positives = 25/30 (83%), Gaps = 1/30 (3%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKI-VKVL 344
YGG +C KCV+ RI RAFLIEEQKI VKVL
Sbjct: 78 YGGSMCAKCVRDRIKRAFLIEEQKIVVKVL 107
>UniRef50_Q6E6C0 Cluster: Large subunit ribosomal protein L34e; n=1;
Antonospora locustae|Rep: Large subunit ribosomal
protein L34e - Antonospora locustae (Nosema locustae)
Length = 113
Score = 82.2 bits (194), Expect = 5e-15
Identities = 40/74 (54%), Positives = 51/74 (68%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
MVQ LT R R +YN SNQ++I RTPG R VY KKP ++P+C +C+SKLRGI RPA
Sbjct: 1 MVQHLTHRGRRTYNNASNQKKIRRTPGNRRVYIPKKKPGRVPKCVKCRSKLRGIDICRPA 60
Query: 214 ERSRLCYRKKTVKR 255
+RL ++TV R
Sbjct: 61 AFARLRKSQRTVAR 74
Score = 31.5 bits (68), Expect = 8.7
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIV 335
YGG LC C++ RI+ AFL E++++
Sbjct: 76 YGGNLCGSCLENRILDAFLSAEEQLL 101
>UniRef50_Q42351 Cluster: 60S ribosomal protein L34-1; n=29;
Eukaryota|Rep: 60S ribosomal protein L34-1 - Arabidopsis
thaliana (Mouse-ear cress)
Length = 120
Score = 79.8 bits (188), Expect = 3e-14
Identities = 41/76 (53%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ KK P+C +++GI RP+
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60
Query: 214 E--RSRLCYRKKTVKR 255
E RSRL ++TV R
Sbjct: 61 EYKRSRLSRNRRTVNR 76
Score = 44.0 bits (99), Expect = 0.002
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 78 YGGVLSGSAVRERIIRAFLVEEQKIVK 104
>UniRef50_P87262 Cluster: 60S ribosomal protein L34-A; n=55;
Eukaryota|Rep: 60S ribosomal protein L34-A -
Saccharomyces cerevisiae (Baker's yeast)
Length = 121
Score = 77.8 bits (183), Expect = 1e-13
Identities = 37/74 (50%), Positives = 49/74 (66%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
M QR+TFRRR YNT+SN+ ++V+TPGG L Q+VKK P+CG C S L+GI RP
Sbjct: 1 MAQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSALQGISTLRPR 60
Query: 214 ERSRLCYRKKTVKR 255
+ + + KTV R
Sbjct: 61 QYATVSKTHKTVSR 74
Score = 48.4 bits (110), Expect = 7e-05
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGG C CVK+RI+RAFLIEEQKIVK
Sbjct: 76 YGGSRCANCVKERIIRAFLIEEQKIVK 102
>UniRef50_Q5CVM8 Cluster: 60S ribosomal protein L34; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L34 -
Cryptosporidium parvum Iowa II
Length = 138
Score = 74.1 bits (174), Expect = 1e-12
Identities = 35/75 (46%), Positives = 46/75 (61%)
Frame = +1
Query: 31 KMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARP 210
KM R+T+RR+ YNT SN+ R+V+TPGGR + Q + K P+CG CK L GI P
Sbjct: 3 KMSPRVTYRRKCRYNTPSNRVRVVKTPGGRNLIQNIGKVYSRPKCGDCKKPLAGIPACAP 62
Query: 211 AERSRLCYRKKTVKR 255
E L R++TV R
Sbjct: 63 YEMKHLKKRERTVAR 77
Score = 46.8 bits (106), Expect = 2e-04
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGG C CV+QRI+RAFL+EEQK+VK
Sbjct: 79 YGGTKCPTCVRQRILRAFLLEEQKVVK 105
>UniRef50_A7AVD9 Cluster: Ribosomal protein L34, putative; n=1;
Babesia bovis|Rep: Ribosomal protein L34, putative -
Babesia bovis
Length = 157
Score = 73.3 bits (172), Expect = 2e-12
Identities = 37/74 (50%), Positives = 46/74 (62%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
MVQR+ RR YNT+SN++R V+TPGGRLV Q K + P+CG CK KL GI RP
Sbjct: 1 MVQRVVLRRHCRYNTRSNKQRKVKTPGGRLVVQRRVKVAQGPKCGDCKCKLAGIPALRPH 60
Query: 214 ERSRLCYRKKTVKR 255
L R++ V R
Sbjct: 61 LYRNLKKRERRVSR 74
Score = 50.0 bits (114), Expect = 2e-05
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGGV CHKCVK RI+RAFL EEQK +K
Sbjct: 76 YGGVRCHKCVKDRIIRAFLKEEQKALK 102
>UniRef50_Q4MZM9 Cluster: 60S ribosomal protein L34a, putative; n=4;
Eukaryota|Rep: 60S ribosomal protein L34a, putative -
Theileria parva
Length = 138
Score = 72.1 bits (169), Expect = 5e-12
Identities = 37/74 (50%), Positives = 43/74 (58%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
MVQR+ +RRR Y T SN + VRTPG RLV +KK K PRCG CK L G+ RP
Sbjct: 1 MVQRVHYRRRNKYKTPSNVVKRVRTPGARLVLHNLKKVGKRPRCGDCKRTLAGVSAVRPF 60
Query: 214 ERSRLCYRKKTVKR 255
L R +TV R
Sbjct: 61 LYKNLKRRNRTVSR 74
Score = 45.6 bits (103), Expect = 5e-04
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGG CH CVK RI+RAFL EEQK V+
Sbjct: 76 YGGSRCHNCVKDRIIRAFLKEEQKCVR 102
>UniRef50_Q7RF49 Cluster: Ribosomal protein L34e, putative; n=5;
Plasmodium|Rep: Ribosomal protein L34e, putative -
Plasmodium yoelii yoelii
Length = 164
Score = 70.9 bits (166), Expect = 1e-11
Identities = 30/74 (40%), Positives = 46/74 (62%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
M QR+ +R+ YNTKSN+ R +RTPGG+L +KK P+C CK+ ++G++ RPA
Sbjct: 1 MAQRVHYRKHNHYNTKSNKVRPIRTPGGKLTIHVIKKKAGKPKCADCKNPIQGVKALRPA 60
Query: 214 ERSRLCYRKKTVKR 255
+ R + + V R
Sbjct: 61 DNQRARKKDRKVSR 74
Score = 44.4 bits (100), Expect = 0.001
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGG +C KC K+RI+RAFL EEQK V+
Sbjct: 76 YGGSICAKCXKERIMRAFLFEEQKCVR 102
>UniRef50_Q4WI54 Cluster: Ribosomal protein L34 protein, putative;
n=10; Eukaryota|Rep: Ribosomal protein L34 protein,
putative - Aspergillus fumigatus (Sartorya fumigata)
Length = 192
Score = 70.9 bits (166), Expect = 1e-11
Identities = 35/73 (47%), Positives = 45/73 (61%)
Frame = +1
Query: 37 VQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE 216
+ R F R YNT+SN+ RI++TPGG L Y ++KK P+CG C KL GI RP E
Sbjct: 81 IDRFLFYR---YNTRSNKVRIIKTPGGELRYLHIKKKGTAPKCGDCGIKLPGIPALRPRE 137
Query: 217 RSRLCYRKKTVKR 255
S++ KKTV R
Sbjct: 138 YSQISRPKKTVSR 150
Score = 47.6 bits (108), Expect = 1e-04
Identities = 23/35 (65%), Positives = 24/35 (68%)
Frame = +3
Query: 234 P*ENSETVYGGVLCHKCVKQRIVRAFLIEEQKIVK 338
P + YGG C CVK RIVRAFLIEEQKIVK
Sbjct: 144 PKKTVSRAYGGSRCAGCVKDRIVRAFLIEEQKIVK 178
>UniRef50_A0D0J3 Cluster: Chromosome undetermined scaffold_33, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_33,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 108
Score = 62.9 bits (146), Expect = 3e-09
Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Frame = +1
Query: 43 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSK--LRGIQPARPAE 216
R+T+RRR SYNT+SN+ R V+TPGG +V QY K C L G++ RP +
Sbjct: 4 RITYRRRTSYNTRSNKIRKVKTPGGNVVVQYPNKKTSASTCADSNLNVVLNGLKRIRPTK 63
Query: 217 RSRLCYRKKTVKR 255
+L R++TV R
Sbjct: 64 LKQLARRQRTVSR 76
Score = 39.5 bits (88), Expect = 0.033
Identities = 18/27 (66%), Positives = 21/27 (77%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGGVL +K RI+RAFL+EE KIVK
Sbjct: 78 YGGVLSAGALKNRIIRAFLVEEVKIVK 104
>UniRef50_UPI000049A50B Cluster: 60S ribosomal protein L34; n=3;
Entamoeba histolytica HM-1:IMSS|Rep: 60S ribosomal
protein L34 - Entamoeba histolytica HM-1:IMSS
Length = 137
Score = 61.7 bits (143), Expect = 7e-09
Identities = 33/74 (44%), Positives = 43/74 (58%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
M R+T+ R+ SYNTKSN RIV+T GG + Q+ +K RCG C L GI+ RP
Sbjct: 1 MAVRVTYVRKHSYNTKSNGIRIVKTAGGNMTVQHRQKISNGVRCGDCGCVLAGIRHIRPH 60
Query: 214 ERSRLCYRKKTVKR 255
+ L K+TV R
Sbjct: 61 QYGWLGKSKRTVTR 74
Score = 46.0 bits (104), Expect = 4e-04
Identities = 17/28 (60%), Positives = 24/28 (85%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVKV 341
YGGV CHKCV+++I+RAFLI E ++K+
Sbjct: 76 YGGVRCHKCVQKKILRAFLINEHNLIKL 103
>UniRef50_Q8SSA2 Cluster: 60S ribosomal protein L34; n=1;
Encephalitozoon cuniculi|Rep: 60S ribosomal protein L34
- Encephalitozoon cuniculi
Length = 110
Score = 57.2 bits (132), Expect = 2e-07
Identities = 30/73 (41%), Positives = 42/73 (57%)
Frame = +1
Query: 37 VQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE 216
++ + + +Y T+SN+RR VRTP G+LV + VKK K RC +C + L I RPAE
Sbjct: 1 MKNVLIHKGATYKTRSNRRRKVRTPSGKLVNRRVKKHSKKHRCHECNAILGSIARMRPAE 60
Query: 217 RSRLCYRKKTVKR 255
SR + V R
Sbjct: 61 FSRQKVSARRVNR 73
Score = 33.5 bits (73), Expect = 2.2
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIV 335
YG C +CV+++I+ AFL E++IV
Sbjct: 75 YGATTCGRCVREKIISAFLGNEERIV 100
>UniRef50_A2DT99 Cluster: Ribosomal protein L34e, putative; n=3;
Trichomonas vaginalis G3|Rep: Ribosomal protein L34e,
putative - Trichomonas vaginalis G3
Length = 116
Score = 52.4 bits (120), Expect = 4e-06
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +1
Query: 43 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERS 222
R T RR L ++T N+ VRTPG +LV Y+ K + P C + ++ GI+ + E
Sbjct: 5 RYTLRRSLGFHTIRNRVAPVRTPGNKLVAHYIAKRQNGPHCAETGKRINGIKCVKTCELR 64
Query: 223 RLCYRKKTVKR 255
R+ ++TV R
Sbjct: 65 RMKKNQRTVSR 75
Score = 31.5 bits (68), Expect = 8.7
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +3
Query: 240 ENSETV---YGGVLCHKCVKQRIVRAFLIEE 323
+N TV YGGV C VK RI+ AF+ EE
Sbjct: 68 KNQRTVSRPYGGVYCGAVVKDRIINAFMEEE 98
>UniRef50_Q9UZJ7 Cluster: 50S ribosomal protein L34e; n=8;
Archaea|Rep: 50S ribosomal protein L34e - Pyrococcus
abyssi
Length = 91
Score = 52.4 bits (120), Expect = 4e-06
Identities = 25/62 (40%), Positives = 35/62 (56%)
Frame = +1
Query: 70 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTV 249
Y ++S +R+ VRTPGGR+V + ++ KI C C L GI RP E +L KK
Sbjct: 5 YRSRSWRRKYVRTPGGRVVIHFERRKPKIAHCAICGRPLNGIPRGRPVEMRKLPKTKKRP 64
Query: 250 KR 255
+R
Sbjct: 65 ER 66
>UniRef50_O14396 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 97
Score = 46.0 bits (104), Expect = 4e-04
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +1
Query: 97 IVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTVKR 255
+++TPG + Y ++KK IPRCG L+GI +RL + KKTV+R
Sbjct: 26 VIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALVLVSLTRLSHNKKTVQR 78
>UniRef50_Q17JY6 Cluster: Ribosomal protein L34, putative; n=1;
Aedes aegypti|Rep: Ribosomal protein L34, putative -
Aedes aegypti (Yellowfever mosquito)
Length = 123
Score = 44.8 bits (101), Expect = 9e-04
Identities = 21/42 (50%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Frame = +1
Query: 61 RLSYNTKSNQRRIVRTPGG-RLVYQYVKKPKKIPRCGQCKSK 183
++SYNT N+RR+VRT G RLVY ++KK + + +C QCK +
Sbjct: 9 KMSYNT--NKRRVVRTLGSDRLVYLFIKKQRIVSKCCQCKGE 48
Score = 44.0 bits (99), Expect = 0.002
Identities = 19/29 (65%), Positives = 26/29 (89%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVKVL 344
+GGV+CH+ +RI+RAFLI+EQK+VKVL
Sbjct: 71 FGGVICHR---ERIIRAFLIDEQKVVKVL 96
>UniRef50_Q8TZB2 Cluster: 50S ribosomal protein L34e; n=3;
Archaea|Rep: 50S ribosomal protein L34e - Methanopyrus
kandleri
Length = 113
Score = 44.8 bits (101), Expect = 9e-04
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +1
Query: 70 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAE 216
Y ++S +R RTPGGR V + KK P+CG C +L G+ R E
Sbjct: 6 YRSRSCRRVYKRTPGGRTVIHFEKKIPNWPKCGACGRRLNGVMRGRNVE 54
>UniRef50_Q4Q141 Cluster: 60S ribosomal protein L34, putative; n=10;
Trypanosomatidae|Rep: 60S ribosomal protein L34,
putative - Leishmania major
Length = 168
Score = 44.4 bits (100), Expect = 0.001
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGGVL H V+ R+VRAFL+EEQ+IVK
Sbjct: 79 YGGVLSHDQVRDRVVRAFLVEEQRIVK 105
Score = 38.7 bits (86), Expect = 0.058
Identities = 15/30 (50%), Positives = 23/30 (76%)
Frame = +1
Query: 43 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQ 132
R+ +RRR+ Y T+ N+ ++VRTPG +LV Q
Sbjct: 5 RVQYRRRMHYATRGNRMKMVRTPGNKLVMQ 34
>UniRef50_O26137 Cluster: 50S ribosomal protein L34e; n=3;
Methanobacteriaceae|Rep: 50S ribosomal protein L34e -
Methanobacterium thermoautotrophicum
Length = 88
Score = 43.2 bits (97), Expect = 0.003
Identities = 23/64 (35%), Positives = 30/64 (46%)
Frame = +1
Query: 64 LSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKK 243
L Y ++S +R +TPGGR V Y +K C C L G+ RP E +L KK
Sbjct: 4 LRYRSRSYKRIFKKTPGGRTVTHYRRKKPSKHVCAGCGKPLHGVPRGRPYEIRKLSKSKK 63
Query: 244 TVKR 255
R
Sbjct: 64 RPNR 67
>UniRef50_A1RXV1 Cluster: Ribosomal protein L34e; n=1; Thermofilum
pendens Hrk 5|Rep: Ribosomal protein L34e - Thermofilum
pendens (strain Hrk 5)
Length = 91
Score = 41.9 bits (94), Expect = 0.006
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 61 RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGI 195
R + ++S +R++VRTPGGRL + K P+C C ++G+
Sbjct: 3 RPALRSRSKKRKLVRTPGGRLALHVIDKKHDYPKCAICGRPIQGV 47
>UniRef50_Q8ZTJ2 Cluster: 50S ribosomal protein L34e; n=3;
Pyrobaculum|Rep: 50S ribosomal protein L34e -
Pyrobaculum aerophilum
Length = 84
Score = 38.7 bits (86), Expect = 0.058
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +1
Query: 61 RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRC 165
R +Y ++S +R V+TPGGR V Y K+ K +P+C
Sbjct: 3 RPAYRSRSVRRIKVKTPGGRTVIHYEKRAKGVPKC 37
>UniRef50_P58026 Cluster: 50S ribosomal protein L34e; n=4;
Thermoprotei|Rep: 50S ribosomal protein L34e - Aeropyrum
pernix
Length = 95
Score = 37.9 bits (84), Expect = 0.10
Identities = 23/65 (35%), Positives = 30/65 (46%)
Frame = +1
Query: 61 RLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRK 240
R ++S +R RTPGG V Y ++ RC +C L G+ RP RL
Sbjct: 8 RPGLRSRSLRRVYRRTPGGSTVVHYERRKPGPARCARCGRPLGGVPRGRPPRVRRL---S 64
Query: 241 KTVKR 255
KT KR
Sbjct: 65 KTAKR 69
>UniRef50_Q3LW25 Cluster: Ribosomal protein L34; n=1; Bigelowiella
natans|Rep: Ribosomal protein L34 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 90
Score = 35.5 bits (78), Expect = 0.54
Identities = 15/41 (36%), Positives = 26/41 (63%)
Frame = +1
Query: 43 RLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRC 165
R+T ++R +Y T SN+ I + GG+ V +Y+KK + +C
Sbjct: 2 RITLKKRKTYKTNSNKFIIKKILGGKYVAKYIKKLRTSNKC 42
>UniRef50_Q6LZK0 Cluster: Ribosomal protein L34e; n=5;
Methanococcus|Rep: Ribosomal protein L34e -
Methanococcus maripaludis
Length = 89
Score = 33.9 bits (74), Expect = 1.6
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +1
Query: 70 YNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERSRLCYRKKTV 249
Y + S+++ + PG + Y +K + CG C + L G+ R E ++L +K
Sbjct: 6 YKSGSSKKVYRKAPGNSSIVHYRRKKQSKAVCGACGALLNGVPRGRAVEITKLAKTEKRP 65
Query: 250 KR 255
+R
Sbjct: 66 ER 67
>UniRef50_UPI000069E55B Cluster: Lymphocyte antigen 75 precursor
(DEC-205) (gp200-MR6) (CD205 antigen).; n=1; Xenopus
tropicalis|Rep: Lymphocyte antigen 75 precursor (DEC-205)
(gp200-MR6) (CD205 antigen). - Xenopus tropicalis
Length = 1716
Score = 32.7 bits (71), Expect = 3.8
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = -3
Query: 336 SQFFVLQ*GRL*QCVA*HIYGRGHHHKPFHCFLTVAKTGTFSRS-SWLDTTEFALALTTP 160
S+ + Q L Q + G HH C LT +TG S + W +++ + L TTP
Sbjct: 1543 SKLGICQSANLLQTAENDVIENGKHHMTVLCSLTSFRTGCPSPAWVWFNSSCYTLLHTTP 1602
Query: 159 WDLLGL 142
DLL +
Sbjct: 1603 KDLLNI 1608
>UniRef50_UPI00003AD95B Cluster: PREDICTED: hypothetical protein;
n=1; Gallus gallus|Rep: PREDICTED: hypothetical protein
- Gallus gallus
Length = 1221
Score = 31.9 bits (69), Expect = 6.6
Identities = 15/34 (44%), Positives = 16/34 (47%)
Frame = -2
Query: 370 DLVLACCALRTFTIFCSSMRKALTMRCLTHLWQR 269
DL LA C T C+ AL CLT LW R
Sbjct: 421 DLTLAVCLSVFITFLCAFCLGALARPCLTRLWMR 454
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 428,368,473
Number of Sequences: 1657284
Number of extensions: 8280770
Number of successful extensions: 18865
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 18445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18861
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 23511729640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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