Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30152
         (452 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    22   2.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    20   9.4  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    20   9.4  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    20   9.4  

>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +1

Query: 127 YQYVKKPKKI 156
           YQ VKKPKKI
Sbjct: 292 YQEVKKPKKI 301


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 326 LFFNEEGSDNALLDTFMA 273
           +F+ +EGS + L D F A
Sbjct: 74  IFYCQEGSVDFLFDNFSA 91


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 326 LFFNEEGSDNALLDTFMA 273
           +F+ +EGS + L D F A
Sbjct: 307 IFYCQEGSVDFLFDNFSA 324


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 326 LFFNEEGSDNALLDTFMA 273
           +F+ +EGS + L D F A
Sbjct: 307 IFYCQEGSVDFLFDNFSA 324


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,776
Number of Sequences: 336
Number of extensions: 2106
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10301074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)