Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30152
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 87 2e-18
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 83 3e-17
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 27 1.3
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 27 1.8
SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|c... 26 2.3
SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces pom... 26 2.3
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 9.5
SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 9.5
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 24 9.5
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 86.6 bits (205), Expect = 2e-18
Identities = 39/74 (52%), Positives = 53/74 (71%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
M QR+T+RRRL+YNT+SN+ RI++TPG + Y ++KK IPRCG L+GI RP
Sbjct: 1 MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60
Query: 214 ERSRLCYRKKTVKR 255
E +RL + KKTV+R
Sbjct: 61 EFARLSHNKKTVQR 74
Score = 43.6 bits (98), Expect = 1e-05
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = +3
Query: 249 ETVYGGVLCHKCVKQRIVRAFLIEEQKIVK 338
+ YGG L VK RIVRAFLIEEQKIVK
Sbjct: 73 QRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 82.6 bits (195), Expect = 3e-17
Identities = 37/74 (50%), Positives = 52/74 (70%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
M QR+T+RRRL+YNT+SN+ RI++TPG + Y ++KK IPRCG L+GI RP
Sbjct: 1 MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60
Query: 214 ERSRLCYRKKTVKR 255
E +RL + +K V+R
Sbjct: 61 EFARLSHNQKKVQR 74
Score = 43.6 bits (98), Expect = 1e-05
Identities = 21/30 (70%), Positives = 22/30 (73%)
Frame = +3
Query: 249 ETVYGGVLCHKCVKQRIVRAFLIEEQKIVK 338
+ YGG L VK RIVRAFLIEEQKIVK
Sbjct: 73 QRAYGGCLSANAVKDRIVRAFLIEEQKIVK 102
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -1
Query: 305 SDNALLDTFMAEDTTINR 252
SDNA +DT ++ED TIN+
Sbjct: 83 SDNAAIDTDISEDETINQ 100
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 26.6 bits (56), Expect = 1.8
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 55 RRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPR 162
RR + N KS+++R PG L + KPK R
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKR 279
>SPAC29B12.13 |||carbon-sulfur lyase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 137
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -2
Query: 406 LSPKIHFVAFFADLVLACCALRTFTIFCSS 317
L IH A + L+CC T I+CSS
Sbjct: 9 LCKAIHLKAIIEEPKLSCCHCETCRIWCSS 38
>SPAC2E1P5.03 |||DNAJ domain protein Erj5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 2.3
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 55 RRRLSYNTKSN-QRRIVRTPGGRLVY 129
R+ SY T + +RIV+ PGGR +Y
Sbjct: 161 RQHESYATSARGSKRIVQVPGGRRIY 186
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 24.2 bits (50), Expect = 9.5
Identities = 9/22 (40%), Positives = 11/22 (50%)
Frame = +1
Query: 160 RCGQCKSKLRGIQPARPAERSR 225
RC +CK +G RP R R
Sbjct: 341 RCSRCKKSKKGCDRQRPCGRCR 362
>SPBC651.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 237
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Frame = -3
Query: 282 IYGRGHHH---KPFHCFLTVAKTGTFSRSSWLDTTEFALA 172
I+ HH KPFHC +A T S LD E ++
Sbjct: 37 IFKNPKHHGEKKPFHCLFKLAGTMKSISLSHLDIPEHRMS 76
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1136
Score = 24.2 bits (50), Expect = 9.5
Identities = 9/31 (29%), Positives = 14/31 (45%)
Frame = -3
Query: 267 HHHKPFHCFLTVAKTGTFSRSSWLDTTEFAL 175
HH C+ F S+++D EF+L
Sbjct: 890 HHQNLLSCYYLHLSKKLFEESAYIDALEFSL 920
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,759,488
Number of Sequences: 5004
Number of extensions: 34352
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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