Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30152
(452 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 89 1e-18
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 89 1e-18
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 88 3e-18
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 29 2.3
08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426 27 5.3
01_05_0589 + 23459847-23460344,23460493-23461296 27 5.3
12_02_0035 - 12563503-12564405,12564494-12565611,12565709-125662... 27 7.1
02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225 27 7.1
04_04_1557 + 34411215-34411571,34411676-34411831 27 9.3
02_05_1325 - 35708046-35708207,35708297-35708374,35708466-357085... 27 9.3
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 89.4 bits (212), Expect = 1e-18
Identities = 45/76 (59%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 214 E--RSRLCYRKKTVKR 255
E RSRL ++TV R
Sbjct: 61 EYKRSRLSRNRRTVNR 76
Score = 43.6 bits (98), Expect = 8e-05
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 78 YGGVLSGTAVRERIIRAFLVEEQKIVK 104
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 89.4 bits (212), Expect = 1e-18
Identities = 45/76 (59%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
MVQRLT+R+R SY TKSNQ R+V+TPGGRLVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 214 E--RSRLCYRKKTVKR 255
E RSRL ++TV R
Sbjct: 61 EYKRSRLSRNRRTVNR 76
Score = 43.6 bits (98), Expect = 8e-05
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 78 YGGVLSGTAVRERIIRAFLVEEQKIVK 104
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 88.2 bits (209), Expect = 3e-18
Identities = 44/76 (57%), Positives = 54/76 (71%), Gaps = 2/76 (2%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
MVQRLT+R+R SY TKSNQ R+V+TPGG+LVYQY KK P+C K++GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 214 E--RSRLCYRKKTVKR 255
E RSRL ++TV R
Sbjct: 61 EYKRSRLSRNRRTVNR 76
Score = 43.6 bits (98), Expect = 8e-05
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 78 YGGVLSGTAVRERIIRAFLVEEQKIVK 104
>03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 28.7 bits (61), Expect = 2.3
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = +1
Query: 67 SYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPAERS 222
S N NQ+R+V+ G + +KP+++ + KL+G RP R+
Sbjct: 1123 SNNQSQNQQRLVQVGGKQGAA--TQKPQRLSNARPAREKLKGDNAKRPGSRT 1172
>08_02_1209 - 25311892-25312170,25312254-25312483,25313081-25313426
Length = 284
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -3
Query: 174 ALTTPWDLLGLFDILINQAATRCPYYSSL 88
A+ + WD G D+LIN A R +S L
Sbjct: 94 AVQSAWDAFGRIDVLINNAGLRGGVHSPL 122
>01_05_0589 + 23459847-23460344,23460493-23461296
Length = 433
Score = 27.5 bits (58), Expect = 5.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = -1
Query: 227 RRERSAGLAGWIPRSLLLH*PHLGIFL 147
R +R + GW P+ L+L+ P +G+F+
Sbjct: 286 RGDRGRTIRGWAPQVLVLNHPAVGVFV 312
>12_02_0035 - 12563503-12564405,12564494-12565611,12565709-12566239,
12566337-12567153
Length = 1122
Score = 27.1 bits (57), Expect = 7.1
Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Frame = +3
Query: 3 SLSPAVKKLENGAAAYIQATTVVQHKIKS-------KKNSKDTGWPLGLSVCQKAQEDPK 161
+L ++ + N A Y Q Q +K+ KK +DT L S+ +++ P
Sbjct: 1045 TLKADIQGMLNDEAKYAQLRDAAQPVVKAFQVLYWKKKGYEDTLRSLRASLASRSKSQPA 1104
Query: 162 VWSVQEQTPWYPAS 203
WS Q++ P+S
Sbjct: 1105 SWSQQDKDSSTPSS 1118
>02_05_0798 - 31810579-31811516,31811646-31811666,31811715-31812225
Length = 489
Score = 27.1 bits (57), Expect = 7.1
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 230 QRRERSAGLAGWIPRSLLLH*PHLGIFL 147
+ +ER LA W P+ L+L P +G+FL
Sbjct: 354 ETKERGV-LASWCPQELVLSHPSVGLFL 380
>04_04_1557 + 34411215-34411571,34411676-34411831
Length = 170
Score = 26.6 bits (56), Expect = 9.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +1
Query: 145 PKKIPRCGQCKSKLRGIQPARPAERSRLCYR 237
P +I RC + ++ ++P RP++ SRLC R
Sbjct: 138 PNRISRCLEEGAEDFLLKPVRPSDVSRLCSR 168
>02_05_1325 -
35708046-35708207,35708297-35708374,35708466-35708512,
35708731-35708839
Length = 131
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 145 PKKIPRCGQCKSKLRGIQPARPAERSRLCYR 237
P +I RC + ++ I+P RP++ SRLC R
Sbjct: 97 PTRIRRCLEEGAEDFLIKPVRPSDVSRLCNR 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,823
Number of Sequences: 37544
Number of extensions: 234759
Number of successful extensions: 522
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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