Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30152
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)          46   1e-05
SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)                 30   0.78 
SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)                      29   2.4  
SB_373| Best HMM Match : Somatomedin_B (HMM E-Value=3.5)               28   4.2  
SB_55308| Best HMM Match : Keratin_B2 (HMM E-Value=2.2)                27   5.5  
SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.5  
SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)                   27   7.3  
SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)               27   7.3  
SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   9.6  
SB_13646| Best HMM Match : SBP56 (HMM E-Value=5.3e-14)                 27   9.6  

>SB_33308| Best HMM Match : Ribosomal_L34e (HMM E-Value=9e-07)
          Length = 58

 Score = 46.4 bits (105), Expect = 1e-05
 Identities = 21/34 (61%), Positives = 24/34 (70%)
 Frame = +3

Query: 234 P*ENSETVYGGVLCHKCVKQRIVRAFLIEEQKIV 335
           P +     YGG  C  CVK+RI+RAFLIEEQKIV
Sbjct: 12  PQKTVSRAYGGSRCAACVKERIIRAFLIEEQKIV 45


>SB_41650| Best HMM Match : RVT_1 (HMM E-Value=1.6e-06)
          Length = 299

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 51  IQATTVVQHKIKSKKNSKDTGWPLGLSV 134
           I     VQH  K+KK + DT +P+G++V
Sbjct: 45  ISGEYAVQHSCKNKKETIDTDYPIGMAV 72


>SB_19489| Best HMM Match : TP2 (HMM E-Value=0.58)
          Length = 429

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +1

Query: 58  RRLSYNTKSNQRRIVRTPGGRLVYQYVKKP 147
           RR++  T SN  R++RTP G+ ++  VK P
Sbjct: 159 RRITKTTNSNSTRLIRTP-GQSIHIKVKAP 187


>SB_373| Best HMM Match : Somatomedin_B (HMM E-Value=3.5)
          Length = 404

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 1   FPCHQLSKSLKMVQRLTFRRRLSYNTKSNQRRIVRT 108
           FP  Q+ +  K   RL   RRL  N    +RR+++T
Sbjct: 160 FPNKQIRRRRKSNLRLALTRRLGKNNPGKKRRVMQT 195


>SB_55308| Best HMM Match : Keratin_B2 (HMM E-Value=2.2)
          Length = 227

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -3

Query: 234 VAKTGTFS-RSSWLDTTEFALALTTPWDLLGLFDILINQAATRCPY 100
           V K   FS +SSW D  + A ++T PW    + D    + A R  Y
Sbjct: 163 VEKRPRFSHQSSWKDAVKKAWSMTDPWAKFHIHDNCAMEIAVRHRY 208


>SB_32196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1333

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 281 MCQATHCQSLPH*RTKNCEGPQGTTGEH*VGKEGYKVNFR 400
           +CQ  HC  LP  R K+C+ P   TG     ++ Y+   R
Sbjct: 115 VCQDDHCACLPCWRGKSCDQPD-LTGPPEFEQKEYEAEIR 153


>SB_58700| Best HMM Match : Ras (HMM E-Value=2.7e-15)
          Length = 857

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +2

Query: 257 LWWCPLP*MCQATHCQSLPH*RTKNCEGPQGTT 355
           LW  P+P   Q + C+S P   T   E P  TT
Sbjct: 229 LWRKPVPKTDQQSECESSPGANTDRLESPARTT 261


>SB_16438| Best HMM Match : HMG_box (HMM E-Value=7.2e-31)
          Length = 690

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 17/60 (28%), Positives = 31/60 (51%)
 Frame = +3

Query: 12  PAVKKLENGAAAYIQATTVVQHKIKSKKNSKDTGWPLGLSVCQKAQEDPKVWSVQEQTPW 191
           P VK+    ++AYI  T+  + K+K+K     T  P    V + A E+ K  + +++ P+
Sbjct: 494 PVVKR---ASSAYIHFTSDFRAKLKAKSAKSGTPLPKANEVAKLAGEEWKKLNDEQKKPY 550


>SB_800| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/60 (23%), Positives = 25/60 (41%)
 Frame = +1

Query: 7   CHQLSKSLKMVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKL 186
           C  L+ +  ++   T +   +Y  K N   +V  P G    Q  ++      CG  K++L
Sbjct: 36  CSALTSTSALIDHTTIKLFGTYEEKGNLFFVVVAPSGSDKIQPARRVASTRSCGNSKTRL 95


>SB_13646| Best HMM Match : SBP56 (HMM E-Value=5.3e-14)
          Length = 204

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 335 HNFLFFNEEGSDNALLDTFMAEDTTINRF 249
           HN L   E G+  A +  F  ED T N+F
Sbjct: 92  HNVLMSTEWGAPEAFIRGFYLEDLTSNKF 120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,340,532
Number of Sequences: 59808
Number of extensions: 267167
Number of successful extensions: 688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)