Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30152
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...    86   1e-17
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ...    30   0.91 
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ...    30   0.91 
AL117202-1|CAB55091.2|  454|Caenorhabditis elegans Hypothetical ...    28   2.8  
Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical pr...    28   3.7  
AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical...    27   8.4  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score = 85.8 bits (203), Expect = 1e-17
 Identities = 41/74 (55%), Positives = 52/74 (70%)
 Frame = +1

Query: 34  MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
           M  R+T+RRRLSYNT SN++R+V+TPGGRLV QY+KK  +IP+C     KL GI PARP 
Sbjct: 1   MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60

Query: 214 ERSRLCYRKKTVKR 255
               L   ++TV R
Sbjct: 61  ALRLLKRNERTVTR 74



 Score = 39.9 bits (89), Expect = 8e-04
 Identities = 18/26 (69%), Positives = 20/26 (76%)
 Frame = +3

Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIV 335
           YGG L    VK+RI RAFL+EEQKIV
Sbjct: 76  YGGCLSPNAVKERITRAFLVEEQKIV 101


>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
            isoform b protein.
          Length = 2692

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 25   SLKMVQRLTFRRRLSYNT-KSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQP 201
            S  +V   +F  +++  T K   R++V      L YQ++ K  + PR  +   +L G+  
Sbjct: 2318 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVN 2377

Query: 202  ARPAERSRLCYRKKTVKRF 258
               A  S  C R  T++R+
Sbjct: 2378 TLLANNSETCRRNLTIQRY 2396


>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
            isoform a protein.
          Length = 2695

 Score = 29.9 bits (64), Expect = 0.91
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 25   SLKMVQRLTFRRRLSYNT-KSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQP 201
            S  +V   +F  +++  T K   R++V      L YQ++ K  + PR  +   +L G+  
Sbjct: 2321 SAPIVSIQSFSSKMNVITSKQRPRKMVIRGSNGLDYQFLLKGHEDPRQDERVMQLFGLVN 2380

Query: 202  ARPAERSRLCYRKKTVKRF 258
               A  S  C R  T++R+
Sbjct: 2381 TLLANNSETCRRNLTIQRY 2399


>AL117202-1|CAB55091.2|  454|Caenorhabditis elegans Hypothetical
           protein Y47D3A.1 protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/56 (30%), Positives = 32/56 (57%)
 Frame = -1

Query: 344 EDLHNFLFFNEEGSDNALLDTFMAEDTTINRFTVFLR*QRRERSAGLAGWIPRSLL 177
           EDL+  L+ N++  D  L++ F+    T ++FT+FL     ++  G +  +PR L+
Sbjct: 203 EDLYVLLWLNKQ-KDPKLVENFINSIITCSKFTIFLTSIFEKKELGHS--LPRELV 255


>Z70718-5|CAA94670.1|  197|Caenorhabditis elegans Hypothetical
           protein C04G2.8 protein.
          Length = 197

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +1

Query: 19  SKSLKMVQRLTFRRRLSYNTKSNQRRIVRTPG-GRLVYQYVKKPKKIPRCGQCKSKLRGI 195
           S SL +V   + RRR S  ++S++R +VR+   G +  +   +     R G+ +S  R  
Sbjct: 68  SPSLVVVISPSPRRRRSSTSRSSRRSVVRSASRGSVSRRSSSRGSVYGRTGRSRSSKRSR 127

Query: 196 QPARPAERSR 225
             +R   RSR
Sbjct: 128 SRSRSRSRSR 137


>AL132948-25|CAC51048.1|  438|Caenorhabditis elegans Hypothetical
           protein Y39B6A.33 protein.
          Length = 438

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
 Frame = +1

Query: 34  MVQRLTFRRRLSYN--TKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPAR 207
           +V +LT +++ +    TK+  +  V  P      + +KKP K+PR     +  +G + A 
Sbjct: 67  VVPKLTKKQQAALEKITKNITQEHVTLPKPSTTSKILKKPAKLPRGNAILALKKGPKAAA 126

Query: 208 PAERSR 225
           PA + +
Sbjct: 127 PAAKKK 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,950,419
Number of Sequences: 27780
Number of extensions: 201026
Number of successful extensions: 462
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 462
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)