Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30152
(452 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A) iden... 80 8e-16
At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) simi... 78 3e-15
At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) simi... 77 4e-15
At3g56240.1 68416.m06250 copper homeostasis factor / copper chap... 28 3.4
At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transfera... 28 3.4
At1g48740.1 68414.m05454 expressed protein 28 3.4
At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SD... 27 4.5
At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SD... 27 4.5
At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SD... 27 4.5
At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SD... 27 4.5
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id... 27 5.9
At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transfera... 27 7.8
At1g28320.1 68414.m03475 protease-related similar to Protease de... 27 7.8
>At1g26880.1 68414.m03278 60S ribosomal protein L34 (RPL34A)
identical to GB:Q42351, location of EST 105E2T7,
gb|T22624
Length = 120
Score = 79.8 bits (188), Expect = 8e-16
Identities = 41/76 (53%), Positives = 51/76 (67%), Gaps = 2/76 (2%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
MVQRL +R R SY TKSNQ RIV+TPGG+LVYQ KK P+C +++GI RP+
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLVYQTTKKRASGPKCPVTGKRIQGIPHLRPS 60
Query: 214 E--RSRLCYRKKTVKR 255
E RSRL ++TV R
Sbjct: 61 EYKRSRLSRNRRTVNR 76
Score = 44.0 bits (99), Expect = 5e-05
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 78 YGGVLSGSAVRERIIRAFLVEEQKIVK 104
>At1g69620.1 68414.m08008 60S ribosomal protein L34 (RPL34B) similar
to SP:Q42351 from [Arabidopsis thaliana]
Length = 119
Score = 77.8 bits (183), Expect = 3e-15
Identities = 40/76 (52%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
MVQRL +R R SY TKSNQ RIV+TPGG+L YQ KK P+C +++GI RP
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTKKRASGPKCPVTGKRIQGIPHLRPT 60
Query: 214 E--RSRLCYRKKTVKR 255
E RSRL ++TV R
Sbjct: 61 EYKRSRLSRNRRTVNR 76
Score = 44.0 bits (99), Expect = 5e-05
Identities = 19/27 (70%), Positives = 23/27 (85%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGGVL V++RI+RAFL+EEQKIVK
Sbjct: 78 YGGVLSGSAVRERIIRAFLVEEQKIVK 104
>At3g28900.1 68416.m03607 60S ribosomal protein L34 (RPL34C) similar
to 60S ribosomal protein L34 GB:P41098 [Nicotiana
tabacum]
Length = 120
Score = 77.4 bits (182), Expect = 4e-15
Identities = 40/76 (52%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = +1
Query: 34 MVQRLTFRRRLSYNTKSNQRRIVRTPGGRLVYQYVKKPKKIPRCGQCKSKLRGIQPARPA 213
MVQRL +R R SY TKSNQ RIV+TPGG+L YQ K P+C +++GI RPA
Sbjct: 1 MVQRLVYRSRHSYATKSNQHRIVKTPGGKLTYQTTNKRASGPKCPVTGKRIQGIPHLRPA 60
Query: 214 E--RSRLCYRKKTVKR 255
E RSRL ++TV R
Sbjct: 61 EYKRSRLARNERTVNR 76
Score = 43.6 bits (98), Expect = 6e-05
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = +3
Query: 258 YGGVLCHKCVKQRIVRAFLIEEQKIVK 338
YGGVL V++RIVRAFL+EEQKIVK
Sbjct: 78 YGGVLSGVAVRERIVRAFLVEEQKIVK 104
>At3g56240.1 68416.m06250 copper homeostasis factor / copper
chaperone (CCH) (ATX1) identical to gi:3168840 Pfam
profile PF00403: Heavy-metal-associated domain
Length = 121
Score = 27.9 bits (59), Expect = 3.4
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 87 SKKNSKDTGWPLGLSVCQKAQEDPKVWSVQE 179
SK K + WP+ KA+ DPKV +V E
Sbjct: 58 SKTGKKTSYWPVEAEAEPKAEADPKVETVTE 88
>At2g36760.1 68415.m04509 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = -1
Query: 224 RERSAGLAGWIPRSLLLH*PHLGIFLGFLTY 132
+ERS + GW P+ L+L P +G GFLT+
Sbjct: 347 KERSLLIKGWSPQMLILSHPAVG---GFLTH 374
>At1g48740.1 68414.m05454 expressed protein
Length = 393
Score = 27.9 bits (59), Expect = 3.4
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 49 TFRRRLSYNTKSNQRRIVRTP-GGRLVYQ 132
+FR+ +S NTK + RRI+ P G LV+Q
Sbjct: 130 SFRKAISENTKESFRRIISEPFPGVLVFQ 158
>At3g55290.2 68416.m06141 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 279
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 195 DTTEFALALTTPWDLLGLFDILINQAATRCPYYSSL 88
D A+ WD+ G D LIN A R SSL
Sbjct: 83 DAATIQKAVREAWDIFGKIDALINNAGIRGNVKSSL 118
>At3g55290.1 68416.m06140 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 280
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/36 (38%), Positives = 16/36 (44%)
Frame = -3
Query: 195 DTTEFALALTTPWDLLGLFDILINQAATRCPYYSSL 88
D A+ WD+ G D LIN A R SSL
Sbjct: 84 DAATIQKAVREAWDIFGKIDALINNAGIRGNVKSSL 119
>At1g62610.2 68414.m07064 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 276
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 195 DTTEFALALTTPWDLLGLFDILINQAATRCPYYSSL 88
D A+ W++ G D+LIN A R SSL
Sbjct: 79 DADTIRKAVKEAWEIFGTIDVLINNAGIRGNVKSSL 114
>At1g62610.1 68414.m07063 short-chain dehydrogenase/reductase (SDR)
family protein contains similarity to
3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
from [Bacillus subtilis]
Length = 277
Score = 27.5 bits (58), Expect = 4.5
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -3
Query: 195 DTTEFALALTTPWDLLGLFDILINQAATRCPYYSSL 88
D A+ W++ G D+LIN A R SSL
Sbjct: 80 DADTIRKAVKEAWEIFGTIDVLINNAGIRGNVKSSL 115
>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
identical to auxin transport protein; BIG [Arabidopsis
thaliana] GI:21779966; contains Pfam profiles PF02207:
Putative zinc finger in N-recognin, PF00569: Zinc finger
ZZ type
Length = 5098
Score = 27.1 bits (57), Expect = 5.9
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -3
Query: 204 SWLDTTEFALALTTPWDLLGLFDILINQAATRCPYY 97
SWLD A L +D++G+ ++++ T+C +
Sbjct: 5055 SWLDEINSATDLQEAFDIVGVLADVLSEGVTQCDQF 5090
>At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -1
Query: 224 RERSAGLAGWIPRSLLLH*PHLGIFLGFLTY 132
+ER + GW P+ L+L P +G GFLT+
Sbjct: 347 KERGLLIKGWAPQVLILSHPSVG---GFLTH 374
>At1g28320.1 68414.m03475 protease-related similar to Protease degS
[Precursor] (SP:P44947) [Haemophilus influenzae];
similar to DegP protease precursor (GI:2565436)
[Arabidopsis thaliana]
Length = 709
Score = 26.6 bits (56), Expect = 7.8
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 57 ATTVVQHKIKSKKNSKDTGWPLGLSVCQKA 146
++ +Q I++ SKD+GW +G S+ A
Sbjct: 141 SSAALQSLIEASSGSKDSGWDIGWSLVSAA 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,394,452
Number of Sequences: 28952
Number of extensions: 187644
Number of successful extensions: 440
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 742437000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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