Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30149
(866 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 144 2e-35
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 138 7e-34
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 127 2e-30
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 122 5e-29
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 117 2e-27
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 104 2e-23
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 52 8e-08
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 52 8e-08
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 52 1e-07
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 52 1e-07
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 50 4e-07
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 50 4e-07
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 49 1e-06
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 45 2e-05
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 43 7e-05
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 36 0.006
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 34 0.023
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.65
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.6
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 26 8.0
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 144 bits (348), Expect = 2e-35
Identities = 62/87 (71%), Positives = 74/87 (85%)
Frame = +1
Query: 1 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN 180
G+ +ELALWDTAGQEDYDRLRPLSYPD+ V+L+CFSVD+P+SL+N+ EKW EV HFC N
Sbjct: 51 GRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSN 110
Query: 181 VPIILVGNKKDLRNDPATINELRKISK 261
+PI+LVG K DLRNDP TI EL K S+
Sbjct: 111 LPILLVGCKVDLRNDPKTIEELSKTSQ 137
Score = 54.8 bits (126), Expect = 2e-08
Identities = 24/37 (64%), Positives = 30/37 (81%)
Frame = +2
Query: 278 EGRAMAEKINAFAYLECSAKSKEGVREVFETATRAAL 388
EG+ +A+KI A+ YLECSAK EGV EVFETA RA++
Sbjct: 144 EGQVVAQKIGAYKYLECSAKLNEGVNEVFETAARASM 180
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 138 bits (335), Expect = 7e-34
Identities = 61/87 (70%), Positives = 72/87 (82%)
Frame = +1
Query: 1 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN 180
G+ VELALWDTAGQEDYDRLRPLSYPD+ VIL+CF+VDSPDSL+N+ EKW EV HFC +
Sbjct: 51 GRHVELALWDTAGQEDYDRLRPLSYPDSHVILICFAVDSPDSLDNVQEKWISEVLHFCSS 110
Query: 181 VPIILVGNKKDLRNDPATINELRKISK 261
+PI+LV K DLRNDP I EL K ++
Sbjct: 111 LPILLVACKADLRNDPKIIEELSKTNQ 137
Score = 64.9 bits (151), Expect = 1e-11
Identities = 31/48 (64%), Positives = 40/48 (83%)
Frame = +2
Query: 272 TAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKKTR 415
T EG+A+A+KI A+ YLECSAK+ EGVREVFE+ATRAA+ +K K K +
Sbjct: 142 TEEGQAVAQKIGAYKYLECSAKTNEGVREVFESATRAAM-LKHKPKVK 188
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 127 bits (306), Expect = 2e-30
Identities = 55/82 (67%), Positives = 65/82 (79%)
Frame = +1
Query: 4 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNV 183
K +ELALWDTAGQE+YDRLRPLSYP+++VIL+CFS+D P SL N+ EKW PEV+HFCP
Sbjct: 62 KVIELALWDTAGQEEYDRLRPLSYPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPRT 121
Query: 184 PIILVGNKKDLRNDPATINELR 249
PI+LVG K DLR D LR
Sbjct: 122 PIVLVGLKADLRKDRNATEVLR 143
Score = 33.1 bits (72), Expect = 0.053
Identities = 18/41 (43%), Positives = 26/41 (63%)
Frame = +2
Query: 278 EGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKK 400
+ +++A +NA Y+ECSAK GV EVF+ A L +KK
Sbjct: 154 QAQSVALSMNA-PYVECSAKENTGVNEVFQLA--VGLTIKK 191
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 122 bits (295), Expect = 5e-29
Identities = 52/84 (61%), Positives = 65/84 (77%)
Frame = +1
Query: 1 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN 180
GK V+LALWDTAGQE+Y+RLRP+SY +IL+ F++DSPDSLEN+ KW E+ CPN
Sbjct: 53 GKSVQLALWDTAGQEEYERLRPMSYAKAHIILVGFAIDSPDSLENVSTKWIEEINTLCPN 112
Query: 181 VPIILVGNKKDLRNDPATINELRK 252
VP ILVG K DLR+DP I E+R+
Sbjct: 113 VPFILVGMKADLRSDPVAIEEMRR 136
Score = 44.0 bits (99), Expect = 3e-05
Identities = 19/49 (38%), Positives = 33/49 (67%)
Frame = +2
Query: 269 ETAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKKTR 415
++ + +A++I A Y+ECS+ + +GV +VFE ATRAAL V+ + +
Sbjct: 143 KSQQAELVAQRIGARKYMECSSLTGDGVDDVFEAATRAALTVRDSENDK 191
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 117 bits (282), Expect = 2e-27
Identities = 51/79 (64%), Positives = 61/79 (77%)
Frame = +1
Query: 16 LALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIIL 195
L L+DTAGQEDYDRLRPLSYP TDV L+CFSV SP S EN+ EKW PEV H CP VP ++
Sbjct: 53 LGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVTSPASFENVKEKWFPEVHHHCPGVPCLI 112
Query: 196 VGNKKDLRNDPATINELRK 252
VG + DLR+DP+ +L +
Sbjct: 113 VGTQIDLRDDPSVQQKLAR 131
Score = 39.5 bits (88), Expect = 6e-04
Identities = 19/48 (39%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Frame = +2
Query: 278 EGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQ--VKKKKKTR 415
+G +A ++ A Y+ECSA +++G++ VF+ A AAL V KKK++
Sbjct: 141 QGERLARELGAVKYVECSALTQKGLKNVFDEAIVAALDPPVPHKKKSK 188
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 104 bits (249), Expect = 2e-23
Identities = 46/73 (63%), Positives = 56/73 (76%)
Frame = +1
Query: 1 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN 180
G +EL+LWDTAGQE+YD+LR LSY DT VI++CF+VDS DSLEN+ KW PEV CP
Sbjct: 58 GNSIELSLWDTAGQEEYDQLRSLSYSDTHVIMICFAVDSRDSLENVITKWLPEVSSNCPG 117
Query: 181 VPIILVGNKKDLR 219
V ++LV K DLR
Sbjct: 118 VKLVLVALKCDLR 130
Score = 47.2 bits (107), Expect = 3e-06
Identities = 23/42 (54%), Positives = 26/42 (61%)
Frame = +2
Query: 278 EGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 403
EG A A+KINA YLECSAK GV E F A R AL + +
Sbjct: 147 EGLAAAKKINAVRYLECSAKLNRGVNEAFTEAARVALAAQPR 188
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 52.4 bits (120), Expect = 8e-08
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 2/90 (2%)
Frame = +1
Query: 4 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCPN 180
+ V L LWDTAGQE + L P D+ V ++ + + + +S N EKW +V+ +
Sbjct: 58 RTVRLQLWDTAGQERFRSLIPSYIRDSSVAIIVYDITNHNSFVN-TEKWIEDVRAERGDD 116
Query: 181 VPIILVGNKKDLRND-PATINELRKISKSL 267
V I+LVGNK DL + T E K +K L
Sbjct: 117 VIIVLVGNKTDLADKRQVTQEEGEKKAKEL 146
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 52.4 bits (120), Expect = 8e-08
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 10 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCP-NVP 186
V+L +WDTAGQE Y L P+ Y + + ++ + + SLE + W E++ P +
Sbjct: 64 VKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEK-AKSWIKELQRQAPEGIV 122
Query: 187 IILVGNKKDLRNDPATINE 243
I L GNK DL + + +
Sbjct: 123 IALAGNKLDLAQERRAVEK 141
Score = 29.1 bits (62), Expect = 0.86
Identities = 19/48 (39%), Positives = 26/48 (54%)
Frame = +2
Query: 260 RACETAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKK 403
RA E A+ A A + N + E SAK+ E V E+F TA L ++ K
Sbjct: 137 RAVEKADAEAYAAEANLL-FFETSAKTAENVNELF-TAIAKKLPLEDK 182
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 52.0 bits (119), Expect = 1e-07
Identities = 26/66 (39%), Positives = 37/66 (56%)
Frame = +1
Query: 22 LWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPIILVG 201
+WDTAGQE LR Y ++ F V S + +N+P W V+ C N+PI+L G
Sbjct: 62 VWDTAGQEKLGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLVR-VCENIPIVLCG 120
Query: 202 NKKDLR 219
NK D++
Sbjct: 121 NKVDVK 126
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Frame = +1
Query: 1 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFC-P 177
GK V+L +WDTAGQE + + Y I++ + V DS N+ ++W E+ +
Sbjct: 54 GKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNV-KQWLQEIDRYAVE 112
Query: 178 NVPIILVGNKKDL 216
V +LVGNK D+
Sbjct: 113 GVNRLLVGNKSDM 125
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 50.0 bits (114), Expect = 4e-07
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Frame = +1
Query: 4 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCPN 180
K+++ +WDTAGQE Y + Y L+ + + S +N+ +W E++ H N
Sbjct: 57 KKIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNV-GRWLKELREHADSN 115
Query: 181 VPIILVGNKKDL 216
+ I+LVGNK DL
Sbjct: 116 IVIMLVGNKTDL 127
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 50.0 bits (114), Expect = 4e-07
Identities = 25/71 (35%), Positives = 39/71 (54%)
Frame = +1
Query: 1 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN 180
GK+++L +WDTAGQE + + Y IL+ + V S +N+ ++ +H N
Sbjct: 55 GKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASEN 114
Query: 181 VPIILVGNKKD 213
V IL+GNK D
Sbjct: 115 VYKILIGNKCD 125
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/43 (37%), Positives = 27/43 (62%)
Frame = +2
Query: 278 EGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKKK 406
+G+A+A+++ +LE SAK+ V E F T R ++KK+K
Sbjct: 136 QGQALADELGV-KFLEASAKTNVNVDEAFFTLAR---EIKKQK 174
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 48.8 bits (111), Expect = 1e-06
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Frame = +1
Query: 4 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN- 180
K+++L +WDTAGQE + + Y ++ + V + DS E + W +++ P+
Sbjct: 60 KRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEEL-SSWLSDIRAMAPST 118
Query: 181 VPIILVGNKKDLRN 222
+ ++L G+K DL+N
Sbjct: 119 ICVVLAGSKSDLQN 132
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 44.8 bits (101), Expect = 2e-05
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 5/90 (5%)
Frame = +1
Query: 4 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPE-VKHFCPN 180
K V L LWDTAGQE + L Y D ++ + V++ S E + + W E + P+
Sbjct: 55 KVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETL-DSWRDEFLIQASPS 113
Query: 181 ----VPIILVGNKKDLRNDPATINELRKIS 258
P IL+GNK D+ +++ + ++
Sbjct: 114 NPETFPFILLGNKVDVEEQKRMVSKSKALA 143
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = +2
Query: 260 RACETAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQ 391
R ++ A + Y E SAK V+E FET + AL+
Sbjct: 134 RMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAKLALE 177
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 42.7 bits (96), Expect = 7e-05
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
Frame = +1
Query: 4 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN- 180
K V L LWDTAGQE + L Y D ++ ++V++ S +++ E W E +
Sbjct: 55 KLVTLQLWDTAGQERFQSLGMAFYRGADCCVIVYNVNNSKSFDSV-ENWRQEFLYQTSQD 113
Query: 181 ---VPIILVGNKKD 213
P I+VGN+ D
Sbjct: 114 ECAFPFIIVGNQID 127
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +2
Query: 317 YLECSAKSKEGVREVFETATRAALQVKKKKKTRVGFF 427
+ E SAK V ++FET +R AL+ + + V F
Sbjct: 154 HFEASAKENTNVTDLFETVSRLALENESSRDDFVNDF 190
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 36.3 bits (80), Expect = 0.006
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Frame = +1
Query: 1 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPN 180
G++ + DTAGQ++Y L ++ +S+ S S E + + H
Sbjct: 51 GQEFATEIIDTAGQDEYSILNSKHSIGIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTE 110
Query: 181 -VPIILVGNKKDLRNDPATINE 243
VPI++VGNK DL A E
Sbjct: 111 WVPIVVVGNKSDLHMQRAVTAE 132
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 34.3 bits (75), Expect = 0.023
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +1
Query: 1 GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVK-HFCP 177
G+ L + DTAGQE+Y +R + L+ +++ S S + I + ++
Sbjct: 53 GEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKD 112
Query: 178 NVPIILVGNKKDLRNDPATIN-ELRKISKSL 267
P++LV NK DL + E +++KS+
Sbjct: 113 TFPVVLVANKCDLEAERVVSRAEGEQLAKSM 143
Score = 27.9 bits (59), Expect = 2.0
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 260 RACETAEGRAMAEKINAFAYLECSAKSKEGVREVFETATRAALQVKKKKK 409
R AEG +A+ ++ Y+E SAK + V E F + R + K ++
Sbjct: 129 RVVSRAEGEQLAKSMHCL-YVETSAKLRLNVEEAFYSLVRTIRRYNKSEE 177
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 29.5 bits (63), Expect = 0.65
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 1/72 (1%)
Frame = +1
Query: 10 VELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWTPEVKHFCPNVPI 189
V L L DT Q D + L+ ++C S E + W P + NVPI
Sbjct: 51 VSLVLVDT--QSDSNEREYLAAEIKKANVICLVYSDNYSYERVSIFWLPYFRSLGVNVPI 108
Query: 190 ILVGNK-KDLRN 222
+L NK +DL N
Sbjct: 109 VLCENKSEDLDN 120
>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1379
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +2
Query: 200 ATKKTSATIPPPSTSFAK*ARACE-TAEGRAMAEKINAFAYLECSAKSKEGV 352
+T+K S T+P P TSF R+ + + A+A + F L ++ S G+
Sbjct: 139 STRKRSLTVPTPRTSFPHHPRSRRFSLKNAAIATSYHKFKPLSSNSLSSSGM 190
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 25.8 bits (54), Expect = 8.0
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Frame = -3
Query: 399 FLTCNAALVA--VSNTSRTPSLLLAEHSRYANALIFSAIA---RPSAVSQALAYFAKLVD 235
F+ + L+A VSNT + + Y N+L+F R + + ALA A LV
Sbjct: 452 FVDTDKELIAHGVSNTLSGAVGSIQNYMTYTNSLMFIRSGGNNRLAGIMLALATVALLVI 511
Query: 234 GGGIVAEV 211
G GI+A +
Sbjct: 512 GPGIIAYI 519
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,661,206
Number of Sequences: 5004
Number of extensions: 75823
Number of successful extensions: 227
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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