Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30148
         (557 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9G831 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    40   0.030
UniRef50_P03896 Cluster: NADH-ubiquinone oxidoreductase chain 2;...    33   6.0  
UniRef50_Q9VR06 Cluster: CG17840-PA; n=4; Diptera|Rep: CG17840-P...    32   7.9  

>UniRef50_Q9G831 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=16; Ditrysia|Rep: NADH-ubiquinone oxidoreductase chain
           2 - Bombyx mori (Silk moth)
          Length = 340

 Score = 40.3 bits (90), Expect = 0.030
 Identities = 20/24 (83%), Positives = 22/24 (91%)
 Frame = +1

Query: 1   LRKLLAFSSINNLG*IIFSIIIRE 72
           LRKLLAFSSINNLG +IFSI+I E
Sbjct: 175 LRKLLAFSSINNLGWMIFSIMISE 198


>UniRef50_P03896 Cluster: NADH-ubiquinone oxidoreductase chain 2;
           n=304; Dicondylia|Rep: NADH-ubiquinone oxidoreductase
           chain 2 - Drosophila melanogaster (Fruit fly)
          Length = 341

 Score = 32.7 bits (71), Expect = 6.0
 Identities = 15/24 (62%), Positives = 21/24 (87%)
 Frame = +1

Query: 1   LRKLLAFSSINNLG*IIFSIIIRE 72
           LRKL+AFSSIN+LG ++ S++I E
Sbjct: 171 LRKLMAFSSINHLGWMLSSLMISE 194


>UniRef50_Q9VR06 Cluster: CG17840-PA; n=4; Diptera|Rep: CG17840-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 858

 Score = 32.3 bits (70), Expect = 7.9
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = -1

Query: 77  KFSLIIIEKIIHPRLLIEENANSF 6
           +F L+ I+++ H RL IEENAN F
Sbjct: 40  RFRLLTIDRLAHNRLSIEENANEF 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,450,121
Number of Sequences: 1657284
Number of extensions: 1152678
Number of successful extensions: 1561
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37071859483
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)