Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30147
(417 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 139 2e-34
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 139 2e-34
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 74 8e-15
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 70 1e-13
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 42 4e-05
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 30 0.17
SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 29 0.29
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 0.88
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 27 1.5
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 1.5
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc... 26 2.0
SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 26 2.7
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 4.7
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 4.7
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 25 6.2
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 25 6.2
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 25 6.2
SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subuni... 25 6.2
SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual 25 6.2
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 24 8.2
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 24 8.2
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 24 8.2
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 24 8.2
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 24 8.2
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 139 bits (336), Expect = 2e-34
Identities = 65/86 (75%), Positives = 71/86 (82%)
Frame = +3
Query: 3 GLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 182
GLKRL+KSDP V C ESGEHIVAGAGELHLEICLKDL+EDHA IP+K S PVVSYRE+
Sbjct: 507 GLKRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRES 566
Query: 183 VAEESDQLCLSKSPNKHNRLFMKASP 260
V+E S LSKSPNKHNR+FM A P
Sbjct: 567 VSEPSSMTALSKSPNKHNRIFMTAEP 592
Score = 72.1 bits (169), Expect = 3e-14
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +2
Query: 257 PMPDGLPEDIDEGRVNSRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPN 415
PM + L I+ G VN RDDFK RAR + +++ +DVT+ARKIWCFGP+ TG N
Sbjct: 592 PMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGAN 644
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 139 bits (336), Expect = 2e-34
Identities = 65/86 (75%), Positives = 71/86 (82%)
Frame = +3
Query: 3 GLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 182
GLKRL+KSDP V C ESGEHIVAGAGELHLEICLKDL+EDHA IP+K S PVVSYRE+
Sbjct: 507 GLKRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSYRES 566
Query: 183 VAEESDQLCLSKSPNKHNRLFMKASP 260
V+E S LSKSPNKHNR+FM A P
Sbjct: 567 VSEPSSMTALSKSPNKHNRIFMTAEP 592
Score = 72.1 bits (169), Expect = 3e-14
Identities = 30/53 (56%), Positives = 39/53 (73%)
Frame = +2
Query: 257 PMPDGLPEDIDEGRVNSRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPN 415
PM + L I+ G VN RDDFK RAR + +++ +DVT+ARKIWCFGP+ TG N
Sbjct: 592 PMSEELSVAIETGHVNPRDDFKVRARIMADEFGWDVTDARKIWCFGPDTTGAN 644
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 74.1 bits (174), Expect = 8e-15
Identities = 37/72 (51%), Positives = 46/72 (63%)
Frame = +3
Query: 3 GLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 182
GL L ++DP VQ EE+GEH++ AGE+HLE CLKDL E A I I+ S P+V YRET
Sbjct: 582 GLDMLNQADPCVQIAVEENGEHVIMCAGEIHLERCLKDLRERFAKIEIQASQPLVPYRET 641
Query: 183 VAEESDQLCLSK 218
D L +K
Sbjct: 642 TIATPDLLAKNK 653
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 70.1 bits (164), Expect = 1e-13
Identities = 35/86 (40%), Positives = 50/86 (58%)
Frame = +3
Query: 3 GLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 182
GL++ KS P+ EESGEH + G GE++++ L DL ++ I I+ SDPV + ET
Sbjct: 619 GLRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYDLRTLYSEIEIRVSDPVARFCET 678
Query: 183 VAEESDQLCLSKSPNKHNRLFMKASP 260
+ S C S +PNK NR+ M P
Sbjct: 679 AVDTSSIKCFSDTPNKKNRITMVVEP 704
Score = 46.8 bits (106), Expect = 1e-06
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +2
Query: 257 PMPDGLPEDIDEGRVNSRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPN 415
P+ G+ DI+ G+VN K + + + Y++D+ +R IW FGP+ G N
Sbjct: 704 PLEKGISNDIENGKVNINWPQKRISEFFQKNYDWDLLASRSIWAFGPDDRGTN 756
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 41.9 bits (94), Expect = 4e-05
Identities = 20/64 (31%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Frame = +3
Query: 6 LKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 182
L R + DP + ++ ES E I++G GELHLE+ ++ + ++ + + P V++RET
Sbjct: 494 LNRFQREDPTFRVQLDNESKETIISGMGELHLEVYVERMRREYK-VDCETGKPRVAFRET 552
Query: 183 VAEE 194
++++
Sbjct: 553 LSKK 556
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.9 bits (64), Expect = 0.17
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 6 LKRLAKSDPMVQCINE-ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 182
L + + DP + + E+G+ ++ G G +HL++ + L + V YRET
Sbjct: 464 LANMNREDPSFRYTQDLENGQLLIQGMGIMHLQVSYERLVSEFGA-RASLGKVQVGYRET 522
Query: 183 VAEESDQLCLSKSPNKHN 236
+ + S + NK N
Sbjct: 523 LIDVSFNSVTLSTENKEN 540
>SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 973
Score = 29.1 bits (62), Expect = 0.29
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 193 SSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCTMGS 26
S T YDTTG+D ++ SS R WS+ P +P ++ I+ T GS
Sbjct: 117 SDYTSVYYDTTGTDDVVYEYHPSSERHKSTNDTWSTNLPT---NPTTTAIYSTSGS 169
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.5 bits (58), Expect = 0.88
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 99 EICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNK 230
E+C +LE+D I +S +S + A++ DQL S + +K
Sbjct: 64 ELCNFELEKDSLESMIHESSTALSAQSNTAQDGDQLASSSTISK 107
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 26.6 bits (56), Expect = 1.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +2
Query: 272 LPEDIDEGRVNSRDDFKT 325
LPE IDEG+++ DD KT
Sbjct: 194 LPEKIDEGKLSDVDDGKT 211
>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 230
Score = 26.6 bits (56), Expect = 1.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 400 LGAKAPNLTGFGNIVFVLFCKIPSAS 323
+G PNL GN +F L ++PS+S
Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194
>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 26.2 bits (55), Expect = 2.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 174 RETVAEESDQLCLSKSPNKHNRLFMKASPCL 266
R T EE + L+KSP+ HNR+ +P +
Sbjct: 466 RLTDDEEREIRALAKSPDIHNRIIASMAPSI 496
>SPCC24B10.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 156
Score = 25.8 bits (54), Expect = 2.7
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Frame = -3
Query: 328 ASLEVIAGIYATLINVLWQTIRH----GLAFMNRRL---CLLGDFERQSWSDSSATVSRY 170
AS +I G +ATL+ + + H L + NR L L F ++ DSS+T + Y
Sbjct: 12 ASFLIIQGAFATLVAPIGD-LEHLSEIELLYTNRVLPSKIPLTPFVKRD-DDSSSTQASY 69
Query: 169 DTTGSDFLIGM-QAWS 125
TT SD +I ++WS
Sbjct: 70 STTVSDVVIVTDKSWS 85
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.0 bits (52), Expect = 4.7
Identities = 10/32 (31%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Frame = -3
Query: 91 SSPAPATMCSPDSSL--IHCTMGSDLARRLRP 2
S+ +P+T+CSPD+++ ++ G L ++ P
Sbjct: 403 SNVSPSTICSPDNNVTFVNLAPGEKLTFKIEP 434
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 4.7
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +2
Query: 284 IDEGRVNSRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTG 409
++E + R+ + Y + + VT ++ + FGP GTG
Sbjct: 502 LEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTG 543
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +2
Query: 263 PDGLPEDIDEGRVNSRDDFKTRARYLTEKYEYDVT 367
P G+ +D DE +N + T + K+ YD T
Sbjct: 386 PYGVDQDFDETCINESEQQATHIPNSSIKFNYDYT 420
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +3
Query: 33 MVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIK 149
M + IN +S + +E CL L+E H +P++
Sbjct: 1 MKEMINLDSSSEPSIVTKQFSVEECLSKLKEQHCYVPMR 39
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 24.6 bits (51), Expect = 6.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -1
Query: 396 GPKHQILRASVTSYSYFS 343
G KH +LRA+ +Y YFS
Sbjct: 318 GHKHLLLRAANIAYHYFS 335
>SPBC27B12.01c |mmm1|SPBC30B4.09c|Mdm10/Mdm12/Mmm1 complex subunit
Mmm1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 24.6 bits (51), Expect = 6.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = -1
Query: 414 LGPVPSGPKHQILRASVTSYSYFS 343
L P P G KHQ+L YFS
Sbjct: 230 LHPSPGGLKHQVLNRITVIMIYFS 253
>SPCC550.07 |||acetamidase |Schizosaccharomyces pombe|chr 3|||Manual
Length = 533
Score = 24.6 bits (51), Expect = 6.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 9 KRLAKSDPMVQCINEESGEHIVAGAGEL 92
KR A + +V C+NE E +A A EL
Sbjct: 83 KRAAIAQQLVNCVNELFYEEALARAAEL 110
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 24.2 bits (50), Expect = 8.2
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -3
Query: 301 YATLINV-LWQTIRHGLAFMNRRLCLLGDFE 212
Y++LI + LW ++ ++F+NRRL L FE
Sbjct: 510 YSSLILISLWISLILFVSFLNRRLILHYSFE 540
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 279
Score = 24.2 bits (50), Expect = 8.2
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +2
Query: 59 RRTHCRWC 82
RR HCRWC
Sbjct: 45 RRHHCRWC 52
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +2
Query: 317 FKTRARYLTEKYEYDVTEA 373
F++R RYLT YE+ V +A
Sbjct: 1068 FESRRRYLTNLYEHIVLKA 1086
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 24.2 bits (50), Expect = 8.2
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 48 NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPN 227
+EE+ + A E C++DL++ + K+SD Y T+ ++KS
Sbjct: 198 DEETLHELFPNASEF---TCVRDLKKLEKKVK-KRSDLGNKYESTLNS-----LINKSVK 248
Query: 228 KHNRLFMKASP 260
KHN+L K P
Sbjct: 249 KHNKLVKKHKP 259
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 24.2 bits (50), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 334 PSASLEVIAGIYATLINVLWQTIR 263
P ASLE + + TLIN ++ +R
Sbjct: 468 PRASLETLCSLCVTLINDTFEPVR 491
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,742,330
Number of Sequences: 5004
Number of extensions: 34080
Number of successful extensions: 127
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 146319408
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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