Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30147
(417 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 159 8e-40
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 81 3e-16
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 54 5e-08
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.38
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6) 29 1.2
SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.7
SB_48289| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.7
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 27 4.7
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0) 27 4.7
SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05) 27 6.2
SB_38648| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09) 27 8.2
SB_36347| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17) 27 8.2
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 159 bits (386), Expect = 8e-40
Identities = 72/86 (83%), Positives = 79/86 (91%)
Frame = +3
Query: 3 GLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 182
GL RLAKSDPMVQ EESGEHIVAGAGELHLEICLKDLEEDHACIP+KKS+PVVSYRE
Sbjct: 497 GLNRLAKSDPMVQSFTEESGEHIVAGAGELHLEICLKDLEEDHACIPLKKSEPVVSYREC 556
Query: 183 VAEESDQLCLSKSPNKHNRLFMKASP 260
V+++S+Q+CLSKSPNKHNRLFM A P
Sbjct: 557 VSDKSNQMCLSKSPNKHNRLFMTAGP 582
Score = 83.0 bits (196), Expect = 9e-17
Identities = 36/54 (66%), Positives = 42/54 (77%), Gaps = 1/54 (1%)
Frame = +2
Query: 257 PMPDGLPEDIDEG-RVNSRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPN 415
P+ + LPEDID+G +N R DFK RARYL + Y +DV EARKIW FGPEGTGPN
Sbjct: 582 PLEEKLPEDIDDGCEINPRQDFKIRARYLADTYGWDVNEARKIWSFGPEGTGPN 635
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 81.4 bits (192), Expect = 3e-16
Identities = 37/86 (43%), Positives = 58/86 (67%)
Frame = +3
Query: 3 GLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRET 182
GL+++ KS P++ EESGEH++ G GEL+L+ + DL ++ I IK +DPV+++ ET
Sbjct: 474 GLRKVNKSYPLLTTKVEESGEHVILGTGELYLDCIMHDLRRMYSEIDIKVADPVIAFCET 533
Query: 183 VAEESDQLCLSKSPNKHNRLFMKASP 260
V E S C +++PNK N++ M A P
Sbjct: 534 VVETSSLKCFAETPNKKNKVTMIAEP 559
Score = 52.8 bits (121), Expect = 1e-07
Identities = 23/53 (43%), Positives = 31/53 (58%)
Frame = +2
Query: 257 PMPDGLPEDIDEGRVNSRDDFKTRARYLTEKYEYDVTEARKIWCFGPEGTGPN 415
P+ GL EDI+ +V + K + KY++D+ AR IW FGPE TGPN
Sbjct: 559 PLEKGLAEDIENEKVLISWNKKKLGEFFQTKYDWDLLAARSIWAFGPENTGPN 611
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 54.0 bits (124), Expect = 5e-08
Identities = 19/41 (46%), Positives = 31/41 (75%)
Frame = +3
Query: 63 EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 185
EH++ AGE+HL+ C+ DL+ +AC+ + SDP++ +RETV
Sbjct: 2 EHVIIAAGEVHLQRCVDDLKRRYACVELNVSDPIIPFRETV 42
Score = 30.3 bits (65), Expect = 0.67
Identities = 11/15 (73%), Positives = 11/15 (73%)
Frame = +2
Query: 371 ARKIWCFGPEGTGPN 415
A IW FGP GTGPN
Sbjct: 179 ADHIWAFGPRGTGPN 193
>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 80
Score = 31.1 bits (67), Expect = 0.38
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 6 LKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 104
+ R + DP + ++ES E I++G GELHL++
Sbjct: 44 INRFTREDPTFRVRFDDESKETIISGMGELHLDV 77
>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
Length = 160
Score = 29.5 bits (63), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +3
Query: 30 PMVQCINEESGEHIVAGAGELHLEICLKDLEE 125
P Q + E EH+VA +G+L E C K L +
Sbjct: 26 PTWQRVKEFQNEHLVAQSGKLRFEACKKTLSK 57
>SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 96
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = +3
Query: 18 AKSDPMVQ---CINEESGEHIVAGAGELHLEICLKDLEEDH 131
AK DP + C NE+SGEH + GE +L I ++ +++D+
Sbjct: 7 AKIDPNLGTRICFNEDSGEH-YSCHGEENLAISMEGMDKDY 46
>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1506
Score = 28.3 bits (60), Expect = 2.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +3
Query: 306 PAMTSRLALGILQKSTNTMLPKPVRFGALAPRVPA 410
PA + GI++ ST ++P P+R + P VPA
Sbjct: 1109 PAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPA 1143
>SB_48289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 27.5 bits (58), Expect = 4.7
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = -1
Query: 408 PVPSGPKHQILRASVTSYSYFSVRYRARVLKSS 310
P P GP LR S S++ FS YR+RVL SS
Sbjct: 241 PWPEGPVTG-LRPSGKSWASFSPGYRSRVLGSS 272
>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1507
Score = 27.5 bits (58), Expect = 4.7
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +1
Query: 127 TMLAFQSRSLTLSCRTVRP*L--RNRTSSVSQSRPTSTTV 240
T+ SR +TLSC+T R + RN +S V+ +R TS V
Sbjct: 1282 TLSCNTSRDVTLSCKTSRGVILARNTSSGVTLTRNTSRGV 1321
>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 746
Score = 27.5 bits (58), Expect = 4.7
Identities = 9/15 (60%), Positives = 14/15 (93%)
Frame = +2
Query: 257 PMPDGLPEDIDEGRV 301
P+PDG+ E+IDEG++
Sbjct: 721 PVPDGIYEEIDEGQI 735
>SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)
Length = 974
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/56 (25%), Positives = 24/56 (42%)
Frame = +3
Query: 45 INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCL 212
+N + GE V G E +C + + DH C D + R + ++ D + L
Sbjct: 199 VNRKEGEEHVCG--EYKCSVCKEVVPPDHLCYVTVGGDALPKKRNSADDDDDSMRL 252
>SB_38648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 27.1 bits (57), Expect = 6.2
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +3
Query: 27 DPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEE 194
D V+ + G H ++G+GE LE + L E + KK + + +RE V E
Sbjct: 293 DDSVEFDQQRGGTHFISGSGETQLERERRVLTERELKLK-KKLEALRKHREHVRHE 347
>SB_44983| Best HMM Match : Death (HMM E-Value=4.8e-09)
Length = 868
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -3
Query: 256 LAFMNRRLCLLGDFERQSWS-DSSATVSRY 170
+AF N ++ LL D E+Q +S DS + + +Y
Sbjct: 626 IAFTNTKMSLLRDLEKQFFSRDSMSAIKQY 655
>SB_36347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 454
Score = 26.6 bits (56), Expect = 8.2
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -3
Query: 73 TMCSPDSSLIHCT 35
TMC PD+SL +CT
Sbjct: 406 TMCKPDTSLFNCT 418
>SB_24724| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2021
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -1
Query: 411 GPVPSGPKHQILRASVTSYS 352
GPVPSG H ILR + Y+
Sbjct: 1303 GPVPSGHVHGILRGYIVYYT 1322
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 26.6 bits (56), Expect = 8.2
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 3/85 (3%)
Frame = -3
Query: 268 IRHGLAFMNRRLCLLGDFERQSWSDSSATVSRYDTT--GSDFLIGMQAWSSSR-SLRQIS 98
+R G F + + D E S+ DSS SR+ +T GS L G R + ++
Sbjct: 524 VRQGERF-DTTSTMSSDIETTSYMDSSDDQSRFSSTTEGSHLLSGRHRRRRRRPRMPRVQ 582
Query: 97 RWSSPAPATMCSPDSSLIHCTMGSD 23
R SS + T + ++I T+ D
Sbjct: 583 RCSSFSTITESTMSLNIITITLNMD 607
>SB_9978| Best HMM Match : Pkinase (HMM E-Value=3.4e-17)
Length = 348
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 215 KVAQQAQPSVHEG*PMPDGLPEDIDEGRVNS-RDDFKTRAR 334
KV ++ + +G +PDGLPE+ + ++ D F TR R
Sbjct: 49 KVKEKVDQKLTKGKDIPDGLPEETSKKLFSAFADKFCTRIR 89
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,671,264
Number of Sequences: 59808
Number of extensions: 286595
Number of successful extensions: 1024
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 777158991
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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