Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30147
         (417 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   1.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   1.0  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   3.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   7.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   7.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   7.4  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              20   9.7  

>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 408 PVPSGPKHQILRASVTSYSYFSVRY 334
           P+P  P H +L A+V   S +  RY
Sbjct: 80  PLPIEPWHGVLNATVLPNSCYQERY 104


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 408 PVPSGPKHQILRASVTSYSYFSVRY 334
           P+P  P H +L A+V   S +  RY
Sbjct: 80  PLPIEPWHGVLNATVLPNSCYQERY 104


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 415 VGAGTLGAKAPNLTGFGNIVFV 350
           V AG +GA+ P+   +GN V V
Sbjct: 903 VTAGVIGARKPHYDIWGNTVNV 924


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +2

Query: 260 MPDGLPEDIDEGRVNSRDDFKTRARYLTEKYEY 358
           +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 312 MTSRLALGILQKSTNTMLPK 371
           +T+ L +  L  STN  LPK
Sbjct: 257 VTTVLTMTTLMSSTNAALPK 276


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 312 MTSRLALGILQKSTNTMLPK 371
           +T+ L +  L  STN  LPK
Sbjct: 257 VTTVLTMTTLMSSTNAALPK 276


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 8/33 (24%), Positives = 17/33 (51%)
 Frame = +2

Query: 260 MPDGLPEDIDEGRVNSRDDFKTRARYLTEKYEY 358
           +PD +P D+   R+   +D     +Y ++ Y +
Sbjct: 566 VPDEVPSDVLYNRLVVSEDGSETFKYSSQPYGF 598


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 312 MTSRLALGILQKSTNTMLPK 371
           +T+ L +  L  STN  LPK
Sbjct: 196 VTTVLTMTTLMSSTNAALPK 215


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/13 (46%), Positives = 11/13 (84%)
 Frame = +2

Query: 278 EDIDEGRVNSRDD 316
           +DI+EG++N  D+
Sbjct: 45  DDINEGKINMDDE 57


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,672
Number of Sequences: 438
Number of extensions: 2311
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)