Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30144
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 27 1.9
SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr 2|... 27 3.3
SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase |Schizosaccha... 27 3.3
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 26 4.4
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.4
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 4.4
SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 5.8
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 5.8
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 5.8
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo... 25 7.7
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 7.7
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 7.7
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Frame = +2
Query: 128 SKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTK------PTRVSRNPVPRP 268
S + KTS+ + R + KEI + Q LHP + R + P+PRP
Sbjct: 674 SNSQKTSKNDMSRNQRNKYAKEIMTGQPTLHPQGQLPIQNVEQRATHKPLPRP 726
>SPBC83.18c |||C2 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 272
Score = 26.6 bits (56), Expect = 3.3
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = +2
Query: 152 RKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPVPRPKSV 277
+KP K ++ RK +S H L PPT P+R VPR S+
Sbjct: 157 KKPSKPSKPRKKVPVS---HPL-PPTPPSREEHVSVPRESSL 194
>SPAC12G12.06c |||RNA 3'-terminal phosphate cyclase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 363
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +2
Query: 386 VSKLCPTIRESIPKARXPKRGKNTTTRSGSKSVSRATEQF 505
V+ LCP I+ES+P R + G+ R G S +R + F
Sbjct: 166 VNFLCPVIKESLPPIRLSEFGRVFRIR-GIASSTRVSPAF 204
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 373 KPKDSFKTLPNNQGINSKGPGPQKGKKHNYQVRLKIS 483
+P S T+ N+ +N GP GK N ++ KIS
Sbjct: 97 RPSVSASTVRNSDDVNHSKAGPGSGKLLNDTLQSKIS 133
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 4.4
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 107 SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPT 238
S+ L S A K Q+ P K R+R S + GL+P PT
Sbjct: 342 SLSPLDHSSAEKEMQKAPAKNKRRRT----GSLETGLYPKESPT 381
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 26.2 bits (55), Expect = 4.4
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 379 KDSFKTLPNNQGINSKGPGPQKGKKHN 459
K S+K + Q + KG +KG++HN
Sbjct: 265 KHSYKKSDSQQSFHHKGRNTRKGQRHN 291
>SPBC651.12c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/48 (20%), Positives = 25/48 (52%)
Frame = +2
Query: 134 ATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPVPRPKSV 277
++ +RKP + + K +S+ + + PT PT+++ P+++
Sbjct: 80 SSSEDERKPARHPQSSSQKPFASSTYNVELPTSPTKITNIGQSSPRAL 127
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 5.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 356 QLWWVSNPRTVSKLCPTIRESIPKAR 433
QLW + P T+S L T IP++R
Sbjct: 373 QLWRILPPNTLSTLVNTASSPIPRSR 398
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +2
Query: 95 RKK*SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPP 226
R+K + S + K + P K ++KRK E+S LH P
Sbjct: 125 RRKQELVSKKAEASRKMEVKAPAKESKKRKVNELSQDVISLHSP 168
>SPBC2A9.06c |||di-trans,
poly-cis-decaprenylcistransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 474 EPDLVVVFFPLLGXRAFGIDSLIVGQSFETVLGFETHH 361
EPDL+++F PLL + F L + + F + + T++
Sbjct: 202 EPDLLIIFAPLLKLQGFPPWQLRLCEIFHDPILYTTNY 239
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +1
Query: 397 LPNNQGINSKGPGPQKGKKHNYQVRLKISFKG 492
L N G+ + P QK K Y +LK+ F G
Sbjct: 1234 LQNASGVLVEDPKLQKNAKGQYTSKLKVYFSG 1265
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 7.7
Identities = 16/69 (23%), Positives = 27/69 (39%)
Frame = +2
Query: 413 ESIPKARXPKRGKNTTTRSGSKSVSRATEQFFRTPKFRSSCKGQNQLWSETKPNLCPKGA 592
ES+P K+ N + KS S TE+ + + S + +L E + P
Sbjct: 84 ESLPSTDKKKKKDNDDFKQNLKSSSNKTEEKYSATQASKSKNDEFELGGEENEDEMPLNG 143
Query: 593 GVNFRIKAQ 619
N + A+
Sbjct: 144 EFNKNVPAK 152
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,660
Number of Sequences: 5004
Number of extensions: 55105
Number of successful extensions: 148
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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