Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30144
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1223 + 31851545-31852609,31854314-31854773,31856201-318562...    29   3.4  
05_05_0192 - 23128460-23128502,23129130-23129216,23129299-231294...    29   4.5  
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497...    29   4.5  
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187...    29   4.5  

>04_04_1223 +
           31851545-31852609,31854314-31854773,31856201-31856250,
           31856333-31856463,31856569-31856665,31856759-31856950,
           31857121-31857123
          Length = 665

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 507 SEPQNSGPVARARTSYGVKQNLTYVPKGQGSISESKPN 620
           S P   GP A  +T+ GV++    VP  QG+ SE+ PN
Sbjct: 489 SRPMRIGPAANKKTT-GVQER---VPNAQGAQSENDPN 522


>05_05_0192 -
           23128460-23128502,23129130-23129216,23129299-23129443,
           23130812-23130872,23131046-23131164,23131320-23131374
          Length = 169

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 144 VFVALDHVNDPTDYFFRNVENLSWF 70
           VF   DH     D+FF++ EN+S+F
Sbjct: 52  VFSTKDHRQVKNDFFFKSAENISFF 76


>03_05_0861 -
           28348669-28348711,28349471-28349557,28349640-28349784,
           28350832-28350900,28351147-28351207,28351375-28351493,
           28351659-28351713
          Length = 192

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 144 VFVALDHVNDPTDYFFRNVENLSWF 70
           VF   DH     D+FF++ EN+S+F
Sbjct: 52  VFSTKDHRQVKNDFFFKSAENISFF 76


>03_02_0981 +
           12917195-12917572,12917661-12917818,12918732-12918765,
           12918942-12919074,12919167-12919221,12919281-12920064,
           12920440-12920769,12920788-12920895,12921259-12921678,
           12921775-12921847,12922291-12922376,12922873-12922992,
           12923086-12923156,12923350-12923449
          Length = 949

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 293 LSCCAHWNVPSYS*SNNSKPGQLWWVSNPRTVSKL 397
           LSC +H   P  + S  S+ G +W V   + +SKL
Sbjct: 750 LSCSSHSEEPKVNGSERSQAGSVWDVFRRQDISKL 784


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,721,558
Number of Sequences: 37544
Number of extensions: 389333
Number of successful extensions: 1003
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)