Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30144
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_11497| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_38668| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_15113| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_48088| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.6  
SB_34151| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_6389| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.1  
SB_12187| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  
SB_51164| Best HMM Match : SOCS_box (HMM E-Value=8e-10)                28   8.0  
SB_13036| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_22450| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2806

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 34/149 (22%), Positives = 62/149 (41%), Gaps = 2/149 (1%)
 Frame = +2

Query: 80   RFSTFRKK*SVGSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPV 259
            + S ++++    S+ WS   K   +KP  L + +K  + +   HG     + T  S    
Sbjct: 2517 QLSNYKRRWHKSSIAWSSFEKRQLQKPSSLQQSKKKDDPAGGSHG---KNRSTSFSGEKK 2573

Query: 260  PRPKSV*QLC*LSCCAHWNVPSYS*SNNSKPGQLWWVSNPRTVSKLCPTIRESIPKARXP 439
             RPKS  +    S        +Y  +  +K G+      P++ S+L    ++   + R  
Sbjct: 2574 KRPKSAQK---KSSRQRTTSATYGPTVQAKEGE-----RPQSASRLSGRNKDEYQRER-K 2624

Query: 440  KRGKNTTT--RSGSKSVSRATEQFFRTPK 520
            KR  +T    + GSK    A E+ ++  K
Sbjct: 2625 KRPYSTENIGKVGSKGYGEALEKNYQEIK 2653


>SB_11497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 140 KTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPVPRPKS 274
           KT+++KPI L+R R  ++  +  +GL      TR+ R  V  PK+
Sbjct: 101 KTNKKKPIGLDRTRSEEQNGNHTYGLPNRYGSTRLLRKAVKNPKA 145


>SB_38668| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 113 GSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPVPRPKS 274
           GS T  K  +T ++ P+  +R R  ++  +  +GL  P   TR+ R  V  PK+
Sbjct: 4   GSST-KKKKRTKKKSPLAWDRTRSEEQNGNHTYGLPNPYGSTRLLRKAVKNPKA 56


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/44 (34%), Positives = 26/44 (59%)
 Frame = -3

Query: 143 FLWLWTMSMTPPIIFSGMWRTFRGSNSAVVVLISTTKSMTSEDS 12
           FL++   S T PI++S   +TFR +   ++ + ST +S +S  S
Sbjct: 634 FLFVLVNSCTNPILYSWRLKTFRNALKKLLGIKSTRQSSSSSTS 677


>SB_15113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 113 GSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPVPRPKS 274
           GS T  K  +T ++ P+  +R R  ++  +  +GL      TR+ R  V  PK+
Sbjct: 4   GSSTKEKKKQTKKKSPLAWDRTRSEEQNGNHTYGLPNRYGSTRLLRKAVKNPKA 57


>SB_48088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -2

Query: 561 SLHNWFWPLQLDLNFGVLKNCSVALETDFEPD 466
           +L NW  P  L+L   +L+ CS  +E  F+PD
Sbjct: 89  TLSNWTRPSDLELTVIILQ-CSANIEKSFDPD 119


>SB_34151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 113 GSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPVPRPKS 274
           GS T  K T+T ++ P+  +R R  ++  +  +GL      TR+ R  V  PK+
Sbjct: 4   GSST-KKKTRTKKKSPLAWDRTRSEEQNGNHTYGLPNRYGSTRLLRKAVRNPKA 56


>SB_8214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
 Frame = +2

Query: 71  NHERFSTFRKK*SV---GSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTR 241
           +HE  S  +KK +    GS T  K  +T ++ P+  +R R  ++  +  +GL      TR
Sbjct: 146 DHELRSLLKKKDAQRLRGSCT-KKKKRTKKKSPLAWDRTRSEEQNGNHTYGLPNRYGSTR 204

Query: 242 VSRNPVPRPKS 274
           + R  V  PK+
Sbjct: 205 LLRKAVKNPKA 215


>SB_6389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +2

Query: 140 KTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPVPRPKS 274
           KT+++ P+  +R R  +E  S  +GL      TR+ R  V  PK+
Sbjct: 8   KTNKKSPLAWDRTRSEEENGSHTYGLPNRYGSTRLLRKAVKNPKA 52


>SB_12187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 140 KTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPVPRPKS 274
           KT+++KP+  +R R  ++  +  +GL      TR+ R  V  PK+
Sbjct: 8   KTNKKKPLAWDRTRSEEQNGNHTYGLPNRYGSTRLLRKAVKNPKA 52


>SB_51164| Best HMM Match : SOCS_box (HMM E-Value=8e-10)
          Length = 322

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/71 (28%), Positives = 31/71 (43%)
 Frame = +2

Query: 338 NNSKPGQLWWVSNPRTVSKLCPTIRESIPKARXPKRGKNTTTRSGSKSVSRATEQFFRTP 517
           +N  P  + W+ NPR +S LC   R++I +A   K  KN       +S        +R  
Sbjct: 246 DNWSPELIDWIRNPRPLSFLC---RQTIRRAVGSKNLKNIACLPLPQSCKDVL--MYRIE 300

Query: 518 KFRSSCKGQNQ 550
            F S C+   +
Sbjct: 301 GFISGCQSSKE 311


>SB_13036| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +2

Query: 113 GSLTWSKATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPVPRPKS 274
           GS T  K T   +++P+  +R R  ++I +  +GL      TR+ R  V  PK+
Sbjct: 4   GSSTKKKKT-LKKKRPLAWDRTRSEEQIGNHTYGLPNRYGSTRLLRKAVKNPKA 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,249,293
Number of Sequences: 59808
Number of extensions: 458880
Number of successful extensions: 2252
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2250
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)