Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30144
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical...    29   4.1  
U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical
           protein F32B4.4b protein.
          Length = 663

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 146 SQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPVPRP 268
           S RKPI  +R+ +    S       PP + +R++R+P+  P
Sbjct: 158 SSRKPITFDREEESNRDSRRTIAAAPPARTSRMARSPLRAP 198


>Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical
           protein F32B4.4a protein.
          Length = 771

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 146 SQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPVPRP 268
           S RKPI  +R+ +    S       PP + +R++R+P+  P
Sbjct: 266 SSRKPITFDREEESNRDSRRTIAAAPPARTSRMARSPLRAP 306


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
            F20C5.2b protein.
          Length = 1130

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = +2

Query: 137  TKTSQRKPIKLNR--KRKCKEISSTQHGLHPPTKPTRVSRN 253
            T  ++RK I + R   R  K+   +   LHPPT P+++S++
Sbjct: 1050 TPRTRRKLISVRRLKDRNRKKFKCSMKRLHPPTSPSKISKS 1090


>Z74473-7|CAA98952.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 519  NSGPVARARTSYGVKQNLTYVPKGQGSISESKPNYVVN*SKF 644
            NSGP +R      +K+ LT  P G   + ++ P+ V+N  +F
Sbjct: 2315 NSGPNSRKGFKMIIKEQLTECPSGVLHVDDNSPSRVLNSPEF 2356


>Z74046-5|CAA98557.1| 3871|Caenorhabditis elegans Hypothetical protein
            ZC116.3 protein.
          Length = 3871

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 519  NSGPVARARTSYGVKQNLTYVPKGQGSISESKPNYVVN*SKF 644
            NSGP +R      +K+ LT  P G   + ++ P+ V+N  +F
Sbjct: 2315 NSGPNSRKGFKMIIKEQLTECPSGVLHVDDNSPSRVLNSPEF 2356


>AL032646-10|CAA21681.1|  725|Caenorhabditis elegans Hypothetical
           protein Y54E2A.11a protein.
          Length = 725

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -2

Query: 129 DHVNDPTDYFFRNVENLSWFQQRCRCVD*YD*KYDKRGLHAV 4
           DH   P    + +V +L W+ Q  RC D +   +DK G+  V
Sbjct: 139 DHWTTPEKQAYNDVGDLWWWLQNERCRDQFAISHDKLGVPTV 180


>U39645-2|AAA80365.2|  638|Caenorhabditis elegans Hypothetical
           protein C14F11.2 protein.
          Length = 638

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 134 ATKTSQRKPIKLNRKRKCKEISSTQHGLHPPTKPTRVSRNPVPRP 268
           +T ++    + L+RKR     ++     HPP   +R +RNP P P
Sbjct: 275 STTSNGSNDVLLDRKRTTTASTTIVAEKHPPHNESRATRNP-PEP 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,575,588
Number of Sequences: 27780
Number of extensions: 331376
Number of successful extensions: 880
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)