Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30143
         (551 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    25   0.58 
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   2.3  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.3  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    22   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.4  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   9.5  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   9.5  

>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 24.6 bits (51), Expect = 0.58
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 140 GHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEWQQR 27
           GH W+ D  +E VR++ Q   L   A  +   D+ ++R
Sbjct: 117 GHEWQADVSEEAVRARMQD--LTEGAKNMTINDDLEKR 152


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 457 GSRSPGSDHGQH 422
           G+RSPG DH ++
Sbjct: 14  GARSPGGDHSEN 25


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 17  SKNVSAAIHPGIPTEPPSRSGLRTGAYSGRSP 112
           S NV AA HP +   P +    +    S +SP
Sbjct: 21  SMNVKAAEHPSLRGTPLAMLAAQCNKLSNKSP 52


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 461 KNERAVPITQTGPGPEEIKEPTAEAES 541
           KN+ A  +T+T P P  I   T+ + S
Sbjct: 144 KNKSAPILTKTSPTPVSINNNTSTSSS 170


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 93  APVRSPDREGGSVGIPG*MA 34
           AP++ P REG     PG +A
Sbjct: 436 APIKGPGREGFYTQNPGFLA 455


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 480 GTARSFFVAAGVLGAITVSTPSEDNRDS 397
           G +    V +GV+  + V    E+N DS
Sbjct: 64  GESEMMVVTSGVIPGVAVDFLGENNDDS 91


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 20.6 bits (41), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 359 RYALPENCNPD 391
           R A P NC+PD
Sbjct: 712 RLARPANCSPD 722


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,825
Number of Sequences: 336
Number of extensions: 2271
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13621010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)