Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30143
(551 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 56 1e-08
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 51 5e-07
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 50 1e-06
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 46 2e-05
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 46 2e-05
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 45 5e-05
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 5e-05
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 43 1e-04
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.21
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38) 30 1.1
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 30 1.4
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32) 29 3.3
SB_26957| Best HMM Match : PDZ (HMM E-Value=0) 29 3.3
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 28 4.4
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1) 27 7.7
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18) 27 7.7
SB_57699| Best HMM Match : efhand (HMM E-Value=1e-08) 27 7.7
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 27 7.7
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 56.4 bits (130), Expect = 1e-08
Identities = 26/61 (42%), Positives = 40/61 (65%)
Frame = +2
Query: 257 EEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVI 436
EEIS+K G + ++GKH+ + EHGY + +F R Y LP+ + TV SR++ DG+L +
Sbjct: 53 EEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVSTVSSRITGDGLLHIE 111
Query: 437 A 439
A
Sbjct: 112 A 112
Score = 32.7 bits (71), Expect = 0.21
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +2
Query: 356 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPI 484
R + LP++ + D++ SRL DG L + A R T +ER V I
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVNI 203
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 51.2 bits (117), Expect = 5e-07
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Frame = +2
Query: 257 EEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVI 436
EEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V SR+S+ G L +
Sbjct: 20 EEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRISNHGHLHIE 78
Query: 437 A----PRTPA----ATKNERAVPITQTGPGPEEIK 517
A P+ A A +++ ++ I G PE IK
Sbjct: 79 ARKALPKPEAELEKAKEDKFSMAIDVAGFPPESIK 113
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 50.4 bits (115), Expect = 1e-06
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +2
Query: 257 EEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVI 436
EEI+ K +G + V G + + E G+ S++F R Y LPE + ++ +R++ DG+L V
Sbjct: 19 EEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDESSISTRIAEDGMLHVE 77
Query: 437 A-PRTPAATKNERAVPITQ 490
A ++P AT +A P T+
Sbjct: 78 ALKKSPPATTENKA-PATK 95
Score = 45.6 bits (103), Expect = 3e-05
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +2
Query: 257 EEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPENCNPDTVESRLSSDGVLTV 433
EE+ VK + V + E +EHG+ + RQF R + LP + DT+ RL DGVL +
Sbjct: 112 EEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVDMDTLVPRLGKDGVLYI 169
Query: 434 IAPRTP 451
A + P
Sbjct: 170 EADKRP 175
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +2
Query: 257 EEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVI 436
EEIS K +G+V V+G+H + G+ ++F R +ALPE V++R+S+ G L +
Sbjct: 20 EEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRISNHGQLHIE 78
Query: 437 A 439
A
Sbjct: 79 A 79
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 46.4 bits (105), Expect = 2e-05
Identities = 23/61 (37%), Positives = 37/61 (60%)
Frame = +2
Query: 257 EEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVI 436
EEIS K +G+V V+G+H + G+ ++F R +ALPE V++R+S+ G L +
Sbjct: 20 EEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGVEASNVKTRISNHGQLHIE 78
Query: 437 A 439
A
Sbjct: 79 A 79
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 257 EEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVI 436
EEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S+ G L +
Sbjct: 20 EEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRISNHGQLHIE 78
Query: 437 A 439
A
Sbjct: 79 A 79
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 257 EEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVI 436
EEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S+ G L +
Sbjct: 254 EEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRISNHGQLHIE 312
Query: 437 A 439
A
Sbjct: 313 A 313
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 257 EEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVI 436
EEIS K +G+V V+G+H + G+ ++F R + LPE V++R+S+ G L +
Sbjct: 20 EEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRISNHGQLHIE 78
Query: 437 A 439
A
Sbjct: 79 A 79
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 43.2 bits (97), Expect = 1e-04
Identities = 22/61 (36%), Positives = 35/61 (57%)
Frame = +2
Query: 257 EEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVI 436
EEIS K +G V V+G+H + G+ ++F R + LPE V++R+S+ G L +
Sbjct: 21 EEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEASNVKTRISNHGQLHIE 79
Query: 437 A 439
A
Sbjct: 80 A 80
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +2
Query: 305 KHEERQDEHGYISRQFTRRYAL 370
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
Length = 468
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +2
Query: 380 CNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGP 499
CNPD+ ++ ++S AP TP AT V T T P
Sbjct: 77 CNPDSGQTTVTSTAATPETAPPTPPATGAPPEVTTTPTPP 116
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 29.9 bits (64), Expect = 1.4
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2
Query: 299 EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLT 430
E K+EE DEHG I R+ T+ TV ++ DGV T
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTT 1230
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 2.5
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +2
Query: 269 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 376
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_57710| Best HMM Match : bZIP_1 (HMM E-Value=0.32)
Length = 584
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/77 (27%), Positives = 36/77 (46%)
Frame = +2
Query: 320 QDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATKNERAVPITQTGP 499
QDE Y+S ++ Y + N +T L+S G + +PAA N + ++G
Sbjct: 296 QDELRYVSNDISKLYKHVCSANGETPSPMLTSVG--SGSRTGSPAAPTNAASASPGKSG- 352
Query: 500 GPEEIKEPTAEAESHET 550
GPEE + P +++
Sbjct: 353 GPEERQSPMGSENPNDS 369
>SB_26957| Best HMM Match : PDZ (HMM E-Value=0)
Length = 1685
Score = 28.7 bits (61), Expect = 3.3
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +2
Query: 335 YISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPR-TPAATKNERAVPITQTGPGPEE 511
Y+SR TR+ A P + PD S + + I+PR A R P P +
Sbjct: 1594 YLSR--TRQQASPHSTEPDIKPSNIQTTESTPSISPRGVEVAAGPRRTPPPVAPKPSTDS 1651
Query: 512 IKEPTAEAES 541
+K + +A S
Sbjct: 1652 LKRSSPQAGS 1661
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 257 EEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPE 376
EE+ VK + V + E +EHG+ + RQF R + LP+
Sbjct: 40 EEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPQ 78
>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -1
Query: 206 GDGGTDVSIGDRHLLPRTVVISGHRWRDDGRQEIVRSKRQSEVLIAKAVRLVSQDEWQQR 27
G G + S G++ + V +WR +G + RS + EV K V + +W+QR
Sbjct: 132 GSGDRERSGGEKEVETEKEVEGSRKWRREGSGDRERSGGEKEVETEKEVE--ERRKWRQR 189
>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.9 bits (59), Expect = 5.8
Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +2
Query: 47 GIPTEPPSRSGLRTGAYSGRS-PDGRH 124
G P+ PPSRS RT SG S D RH
Sbjct: 853 GKPSTPPSRSKKRTRGISGDSVSDNRH 879
>SB_20795| Best HMM Match : Amelogenin (HMM E-Value=1)
Length = 630
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +2
Query: 53 PTEPPSRSGLRTGAYSGRSPDGRHHANDVQRLLPSV 160
PT P ++ R + + G HH ++QR PSV
Sbjct: 356 PTSPSAKQRQRCNSVGNIARGGHHHHGNMQRRHPSV 391
>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
Length = 1023
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 36 PFILGYQPNRLRDQDFGLALTPDDLLTAVI-TPTMSRDYYRPW 161
PF +G+ N++ + F PD L +I TP M ++P+
Sbjct: 34 PFKIGWYNNQVTHKQFQFPFDPDTLAFVIISTPEMFEKGFKPF 76
>SB_57699| Best HMM Match : efhand (HMM E-Value=1e-08)
Length = 676
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 228 PGIYPYSR*WWNRRLYWRSPSASTDGSN 145
PG P +R WW RRL +P S + S+
Sbjct: 160 PGTSPKNRKWWLRRLMCYNPIISKETSH 187
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 27.5 bits (58), Expect = 7.7
Identities = 25/95 (26%), Positives = 35/95 (36%)
Frame = +2
Query: 251 FAEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLT 430
FAE S + E E+R+D G + Q R + E+ S DG T
Sbjct: 2392 FAEMSSESVVEVVNHEEDITEDRKDVDGAL--QLEEREPTKGEVSEKRTETYSSDDGFRT 2449
Query: 431 VIAPRTPAATKNERAVPITQTGPGPEEIKEPTAEA 535
T T R + T GP + EP+ E+
Sbjct: 2450 TTITTTTVKT-TRRIISTTMDKKGPLDTDEPSVES 2483
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Frame = +2
Query: 386 PDTVESRLSSDGVLTVIAPRTPAATKN----ERAVPITQTGPGPE 508
P+T + +++ T +AP T A K+ VPIT+T GPE
Sbjct: 1348 PETTVAPVTTVIPETTVAPDTTVAPKSTTLASTVVPITETAAGPE 1392
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,240
Number of Sequences: 59808
Number of extensions: 313712
Number of successful extensions: 1187
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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