Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30142
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 132 5e-32
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 132 5e-32
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 103 2e-23
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 85 8e-18
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 37 0.002
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 27 2.1
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 27 2.8
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 8.6
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 132 bits (318), Expect = 5e-32
Identities = 58/90 (64%), Positives = 68/90 (75%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EPV+L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR
Sbjct: 726 EPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELR 785
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCDLRASP 271
T GQAFPQ VFDHW + GDP D + P
Sbjct: 786 QATAGQAFPQLVFDHWSPMSGDPLDPTSKP 815
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +1
Query: 247 PVRPQSKPYNVVQETRKRKGLKEGLP 324
P+ P SKP +V E RKRKGLKE +P
Sbjct: 808 PLDPTSKPGQIVCEARKRKGLKENVP 833
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 132 bits (318), Expect = 5e-32
Identities = 58/90 (64%), Positives = 68/90 (75%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EPV+L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +KAYLPVNESFGFT +LR
Sbjct: 726 EPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYLPVNESFGFTGELR 785
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCDLRASP 271
T GQAFPQ VFDHW + GDP D + P
Sbjct: 786 QATAGQAFPQLVFDHWSPMSGDPLDPTSKP 815
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +1
Query: 247 PVRPQSKPYNVVQETRKRKGLKEGLP 324
P+ P SKP +V E RKRKGLKE +P
Sbjct: 808 PLDPTSKPGQIVCEARKRKGLKENVP 833
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 103 bits (247), Expect = 2e-23
Identities = 49/102 (48%), Positives = 66/102 (64%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EPVY+ E+ P ++ IY +L RRRGHV ++ G+P+++V+A +PV +S GF DLR
Sbjct: 842 EPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIPVIDSCGFETDLR 901
Query: 182 SNTGGQAFPQCVFDHWQVLPGDPCDLRASPTTLYRKRERGKD 307
+T GQA Q VFDHWQV+PGDP D P L + RG D
Sbjct: 902 VHTQGQAMCQMVFDHWQVVPGDPLDKSIKPKPL--EPARGSD 941
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1000
Score = 85.0 bits (201), Expect = 8e-18
Identities = 35/81 (43%), Positives = 53/81 (65%)
Frame = +2
Query: 8 VYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSN 187
+Y C++Q +G +YGV+++RRG V +E GTP FIVKA +PV ESFGF ++
Sbjct: 866 MYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKR 925
Query: 188 TGGQAFPQCVFDHWQVLPGDP 250
T G A+PQ +F +++L +P
Sbjct: 926 TSGAAYPQLIFHGFEMLDENP 946
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +2
Query: 2 EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLR 181
EP+ I P GG+ G L++R+ + + F ++A +P+N F +++D+R
Sbjct: 676 EPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSMFSYSSDIR 733
Query: 182 SNTGGQ 199
+ T G+
Sbjct: 734 ALTKGK 739
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = -1
Query: 375 NLL*LCSLQFVQILS*V-WETFLQSFPLSRFLYNVVGLALRSHGSPGRTCQWSNTHC 208
N+ L + + + ++S + W + F + F+Y+ VG + H S RTCQ C
Sbjct: 1229 NIFILMNQERLNLISLITWMFSIGVFWIWTFIYSEVGPSYAFHKSASRTCQTFGFWC 1285
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = +3
Query: 165 LLPICVPTPADRPSRSAYSTIGRSSLETRATSEQALQR 278
+LP+ + TPA P + YS G S + LQ+
Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTSIFNPVCVKRKILQQ 146
>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 350
Score = 25.0 bits (52), Expect = 8.6
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -2
Query: 467 SHLRVCFNMMRNM---CC*K*TCVKRFPYRYVFLICFNYVV 354
SH +C N + + C TC+ R YRY F+ + V+
Sbjct: 196 SHCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVL 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,633
Number of Sequences: 5004
Number of extensions: 49079
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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