Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30142
         (606 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    23   2.3  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    23   2.3  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    23   2.3  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   4.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   4.1  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   7.1  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   7.1  

>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 563 LYCNYYFKLYF 595
           LYCN Y KLY+
Sbjct: 99  LYCNNYKKLYY 109


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 563 LYCNYYFKLYF 595
           LYCN Y KLY+
Sbjct: 99  LYCNNYKKLYY 109


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 563 LYCNYYFKLYF 595
           LYCN Y KLY+
Sbjct: 99  LYCNNYRKLYY 109


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 262 SKPYNVVQETRKRKGLKEGLP 324
           S+PY   +     KG KEG+P
Sbjct: 593 SQPYGFPERLLLPKGKKEGMP 613


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 262 SKPYNVVQETRKRKGLKEGLP 324
           S+PY   +     KG KEG+P
Sbjct: 593 SQPYGFPERLLLPKGKKEGMP 613


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 568 VQVDHVHLHNNVIPKKRYSL 509
           V ++H+   NN I +KR+ L
Sbjct: 94  VYIEHLTKLNNAIEEKRFEL 113


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 41  AVGGIYGVLNRRR 79
           A GGIY + N+RR
Sbjct: 317 AEGGIYDISNKRR 329


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,324
Number of Sequences: 438
Number of extensions: 3646
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)