Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30139
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    32   0.091
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    30   0.37 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    29   0.85 
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    25   7.9  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 31.9 bits (69), Expect = 0.091
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 243 SPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAIHQVP 419
           +PS  +  +   +  AP+ H  PA   AP   +AP   +A     AP++    A+  VP
Sbjct: 511 TPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVP 569



 Score = 30.3 bits (65), Expect = 0.28
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +3

Query: 243 SPSSHEASSYQAIH-SAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAIHQVP 419
           S +S +A+    I  S P    AP   EAP+ H  PAA  A    +AP   A   + + P
Sbjct: 498 SSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAP 557

Query: 420 A 422
           +
Sbjct: 558 S 558



 Score = 29.5 bits (63), Expect = 0.48
 Identities = 20/61 (32%), Positives = 24/61 (39%)
 Frame = +3

Query: 237 PCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAIHQV 416
           P +P   EA S   +H  P   VAP    AP   AAP    A +    PA+        V
Sbjct: 518 PAAPVVPEAPS---VHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSV 574

Query: 417 P 419
           P
Sbjct: 575 P 575



 Score = 29.5 bits (63), Expect = 0.48
 Identities = 15/46 (32%), Positives = 21/46 (45%)
 Frame = +3

Query: 285 SAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAIHQVPA 422
           +AP    AP+ H+ P    AP   SA     AP +    ++ Q PA
Sbjct: 519 AAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPA 564



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
 Frame = +3

Query: 204 SYPHHPRSSYLPCSPSSHE---ASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYH 374
           S P  P +  +P +PS H+   A     + SAP    AP   EAP+    PA        
Sbjct: 513 SVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEAL 572

Query: 375 TAPAIHATSAIHQVPA 422
           + P         +VP+
Sbjct: 573 SVPQPPVAPVAPEVPS 588



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/79 (25%), Positives = 27/79 (34%)
 Frame = +3

Query: 183 P*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSA 362
           P  P     P  P     P +P + E  S     +AP    AP+  + P     P A S 
Sbjct: 515 PQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSV 574

Query: 363 TTYHTAPAIHATSAIHQVP 419
                AP      ++ Q P
Sbjct: 575 PQPPVAPVAPEVPSVPQPP 593



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/76 (23%), Positives = 27/76 (35%)
 Frame = +3

Query: 192 PCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTY 371
           P   S P  P +   P  PS  +  +   +  AP+    PA    P   + P   +    
Sbjct: 599 PEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAVPVV 658

Query: 372 HTAPAIHATSAIHQVP 419
             AP++    A   VP
Sbjct: 659 PEAPSVPQPPAAPVVP 674



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 18/71 (25%), Positives = 25/71 (35%)
 Frame = +3

Query: 210 PHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAI 389
           P  P +  +P  P    A       S P   VAP   E P+    PA        + P  
Sbjct: 578 PVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQP 637

Query: 390 HATSAIHQVPA 422
            A   + +VP+
Sbjct: 638 PAAPVVPEVPS 648



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/70 (22%), Positives = 23/70 (32%)
 Frame = +3

Query: 210 PHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAI 389
           P  P +  +P  P +  A    ++   P   V P     P   AAP      +    PA+
Sbjct: 596 PVVPEAPSVPQPPVAPVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPAV 655

Query: 390 HATSAIHQVP 419
                   VP
Sbjct: 656 PVVPEAPSVP 665


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 29.9 bits (64), Expect = 0.37
 Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 427 IQHQLFMKLQLFTFPPHFTP--PQLDM 501
           +QH LF KL+L   PPH  P  P LD+
Sbjct: 342 LQHSLFFKLKLKFLPPHKLPWIPSLDV 368


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 18/67 (26%), Positives = 27/67 (40%)
 Frame = +3

Query: 219  PRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHAT 398
            P  +  P +P +    + Q +  AP + VAP   +AP       A S+     AP     
Sbjct: 1427 PLKASQPTNPGAPSNHAPQVVPPAPMHAVAPVQPKAPGMVTNAPAPSSAPAPPAPVSQLP 1486

Query: 399  SAIHQVP 419
             A+  VP
Sbjct: 1487 PAVPNVP 1493


>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -3

Query: 507 DLHVQLRRREVRWKREQLELHEQL 436
           +L   L+R+E+ ++REQ+EL  +L
Sbjct: 66  NLKNDLKRKELEFEREQIELQRKL 89


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 201 SSYPHHPRSSYLPCSPSSHEASSYQAIHSA 290
           SS  HH RSSY   +  +  + SY  + +A
Sbjct: 163 SSSAHHSRSSYYDLATPTRSSFSYNTVGAA 192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,910,306
Number of Sequences: 5004
Number of extensions: 62073
Number of successful extensions: 191
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)