Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30139
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0302 - 2021221-2023305 45 7e-05
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 36 0.041
06_02_0085 + 11555539-11555632,11555767-11555867,11556947-115570... 34 0.12
04_04_0857 + 28794127-28794786 31 0.67
03_03_0188 + 15269347-15270213 31 0.67
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814... 31 1.2
04_03_1022 - 21778315-21779007 30 1.5
02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757 30 1.5
08_02_1245 - 25557201-25558199 30 2.0
08_02_0783 - 21166491-21166892,21167139-21167251,21168127-211682... 30 2.0
02_01_0305 + 2041370-2043114,2043764-2044121 30 2.0
11_04_0113 - 13590161-13590678,13590817-13590997 29 2.7
04_04_0347 + 24564589-24565296 29 2.7
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 2.7
01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574 29 2.7
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 29 4.7
01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149 29 4.7
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 28 6.2
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 28 6.2
02_03_0265 + 17066253-17066501,17067102-17068121 28 6.2
01_06_0451 - 29476892-29477516,29477600-29477843,29478313-294787... 28 8.2
>02_01_0302 - 2021221-2023305
Length = 694
Score = 44.8 bits (101), Expect = 7e-05
Identities = 31/102 (30%), Positives = 43/102 (42%)
Frame = +3
Query: 114 SNHPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAP 293
S+H P S P+Y S G P P S P SY P PSS + P
Sbjct: 455 SSHSPPGGSSSTTPSYPSPNGGKPSTPSHPSPPGSTTPSY-PSPPSSS---------TTP 504
Query: 294 TYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAIHQVP 419
+YH P GH P++ + P++ +A H+ P T + P
Sbjct: 505 SYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQSTPTHPSYPSP 546
Score = 41.5 bits (93), Expect = 6e-04
Identities = 42/150 (28%), Positives = 63/150 (42%), Gaps = 17/150 (11%)
Frame = +3
Query: 21 NCANLRCCGRKPRRPPTSWPGGIVSEYRAP*SNHP------PRDAHSLHCPAYCSRGTGC 182
+C+ +C P PG AP S+ P P+ S P+Y S +
Sbjct: 374 DCSKAQCQAASYTPTPGGSPGRGGQGPPAPVSSPPRRRGPYPQPPSSSPTPSYPSPSSSY 433
Query: 183 P*NPCCS--SYPHHPRSSYLPCSPS-----SHEASSYQAIH----SAPTYHVAPAGHEAP 329
P P + SYP P S+ P S S S SY + + S P+ H +P G P
Sbjct: 434 PAPPGSNTPSYPSPPSSATTPSSHSPPGGSSSTTPSYPSPNGGKPSTPS-HPSPPGSTTP 492
Query: 330 TYHAAPAAHSATTYHTAPAIHATSAIHQVP 419
+Y + P++ + +YH+ P H T + H P
Sbjct: 493 SYPSPPSSSTTPSYHSPPQGHTTPS-HPSP 521
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 35.5 bits (78), Expect = 0.041
Identities = 33/109 (30%), Positives = 42/109 (38%), Gaps = 3/109 (2%)
Frame = +3
Query: 66 PTSWPGGIVSEYRAP*SNHP-PRDAHSLHCPAYCSRGTGC--P*NPCCSSYPHHPRSSYL 236
PT+ PGG P P P S P CS T C P P + P P SY
Sbjct: 270 PTT-PGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPAPSSGTSPTTPGGSYY 328
Query: 237 PCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAP 383
P +PS + + ++PT P G T P + S+ T T P
Sbjct: 329 PPTPSIGDVPPSPSSDTSPT---TPGGGSPSTPCDTPPSPSSGTSPTTP 374
Score = 28.7 bits (61), Expect = 4.7
Identities = 34/128 (26%), Positives = 49/128 (38%), Gaps = 8/128 (6%)
Frame = +3
Query: 24 CANLRCCGRKPR----RPPTSWPGGIVSEYRAP*SNHPPRDAH--SLHCPAYCSRGTGC- 182
C+ CG P PT+ PGG + PP + S P S T C
Sbjct: 302 CSTPTPCGTPPAPSSGTSPTT-PGGSYYPPTPSIGDVPPSPSSDTSPTTPGGGSPSTPCD 360
Query: 183 -P*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHS 359
P +P + P P Y P +PS + A ++P+ G+ T +AP + S
Sbjct: 361 TPPSPSSGTSPTTPGGGYYPPTPSVGDVPPSPASGTSPS-TPGSGGYSPSTPCSAPPSPS 419
Query: 360 ATTYHTAP 383
+ T T P
Sbjct: 420 SGTSPTTP 427
>06_02_0085 +
11555539-11555632,11555767-11555867,11556947-11557056,
11557152-11557227,11557412-11557555,11558432-11558503,
11558601-11559470
Length = 488
Score = 33.9 bits (74), Expect = 0.12
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Frame = +3
Query: 204 SYPHHPRSSYLPCSPSSHEASSYQAIH--SAPTYHVAPAGHEAPT-YHAAPAAHSATTYH 374
SYP SS +P P+ H++S Y A SA +Y + + H APT YH P+A + T
Sbjct: 367 SYPSFQDSS-VPSVPT-HQSSFYPASDGTSAVSYSPSGSNHPAPTQYH--PSADTTTHQV 422
Query: 375 TAPAI 389
T PAI
Sbjct: 423 TPPAI 427
>04_04_0857 + 28794127-28794786
Length = 219
Score = 31.5 bits (68), Expect = 0.67
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 198 CSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSAT 365
C ++ PR +P + HE A+ +A + AP H A AA A AT
Sbjct: 105 CLNFADSPRRLRVPPLGAGHEEIRRAAVEAAELFRPAPGQHNAAAEAAAAVAAQAT 160
>03_03_0188 + 15269347-15270213
Length = 288
Score = 31.5 bits (68), Expect = 0.67
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = +3
Query: 201 SSYPHHPRSSYLPCSPSSHEASSYQAI-HSAPTYHVAPAGHEAPTYHAAPAA 353
SSY HH +S +LP S SS+ S + + H++ + + +AP H P A
Sbjct: 31 SSYQHH-QSLFLPSSSSSYLDSPFHGLLHTSSSSSATMSPSQAPPPHPPPPA 81
>06_03_0874 -
25580417-25580419,25580504-25580604,25580828-25581411,
25581523-25581594,25581667-25581793,25583412-25583516,
25583643-25583676
Length = 341
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +3
Query: 288 APTYHVAPAGHEA-PTYHAAPAAHSATTYHTAPAIH 392
+P+Y + PAG+ A P Y + PA+H Y T+ H
Sbjct: 170 SPSYALPPAGYPAVPPYQSYPASHVPAPYPTSAYPH 205
>04_03_1022 - 21778315-21779007
Length = 230
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = +3
Query: 54 PRRPPTSWPGGIVSEYRAP*SNHPPRDAHSLHCPAYCSRGTGCP*NPCCSSY--PHHPRS 227
P PP P V + P S P + H P Y T P P Y PHHP
Sbjct: 36 PPPPPPPPPPPYVPPHLLPPSPAPQQWYD--HPPNYHPPHTPAP-APAPGPYIPPHHPHH 92
Query: 228 SYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPA 350
+ P +P+ +++ P Y+ P P Y+ +PA
Sbjct: 93 HHPP-TPAPAPSTTPGGHGGVPPYYPPPPVTPTPYYYPSPA 132
>02_05_0935 - 32859353-32859360,32859476-32860438,32860535-32860757
Length = 397
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 2/71 (2%)
Frame = +3
Query: 219 PRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHA--APAAHSATTYHTAPAIH 392
P SY P+ H+A+ YQA++ P A YHA +P T H P
Sbjct: 167 PAPSY--SRPAPHDAAPYQALYGGPYAAATARTPAAAAYHAQVSPFHLQLDTTHPHPPPS 224
Query: 393 ATSAIHQVPAY 425
S H+ AY
Sbjct: 225 YYSMDHKEYAY 235
>08_02_1245 - 25557201-25558199
Length = 332
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 65 SYIMARRYRLRISCAMIKPSTTRRPFTTLPCILLPW-HRLPLKSMLLQLSTPSKKLLPTM 241
S+ +A R+R + A P T+ P +P I LP+ H PL + L + PS +LL T
Sbjct: 86 SFAIANRHRHPVVSAGHHPLLTQSPHDLVPFIELPFRHIHPLAAALDAI--PSPRLLGTH 143
Query: 242 QP 247
P
Sbjct: 144 MP 145
>08_02_0783 -
21166491-21166892,21167139-21167251,21168127-21168208,
21168298-21168416,21168471-21168528,21168954-21169016,
21169641-21169850,21171549-21171731
Length = 409
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 141 SLHCPAYCSRGTGCP*NPCC-SSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAG 317
++ A+ S + P P S PH+P S S S+QA H P Y V PA
Sbjct: 339 NMQAGAFGSASSAYPTQPMMPGSVPHYPGIG----SSSGALPVSFQASHQMPQYGVPPA- 393
Query: 318 HEAPTYHAAPA 350
AP +HA PA
Sbjct: 394 --AP-HHAPPA 401
>02_01_0305 + 2041370-2043114,2043764-2044121
Length = 700
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/47 (38%), Positives = 23/47 (48%)
Frame = +3
Query: 264 SSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSA 404
SS + +A H A A + HAA A SA T TA A ++SA
Sbjct: 25 SSAATLAAAAARHAAAASSSSAARHAAAAPSSAATLATAAAPSSSSA 71
>11_04_0113 - 13590161-13590678,13590817-13590997
Length = 232
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +3
Query: 321 EAPTYHAAPAAHSATTYHTAPAIHATSA 404
E+PT A PAA +A H A IH +A
Sbjct: 47 ESPTIRATPAAQAAANQHAACNIHEVTA 74
>04_04_0347 + 24564589-24565296
Length = 235
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +3
Query: 213 HHPRSSYLPCSPSSHEASSYQAIHS-APTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAI 389
HH R + + +H SS+ H+ AP + P AP APA T H APA
Sbjct: 102 HHHR--HATATAPAHAPSSHHDRHAPAPVHSSWPWPAHAPA--PAPAVIHGTNSHLAPAP 157
Query: 390 HATSAIHQVPA 422
+S + PA
Sbjct: 158 APSSHVQYSPA 168
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 249 SSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAA 353
S++ S +++ S+ V GH APT H+APA+
Sbjct: 277 STNAQSKGKSVTSSAVPQVTSIGHGAPTVHSAPAS 311
>01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574
Length = 212
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/62 (35%), Positives = 25/62 (40%)
Frame = +3
Query: 168 RGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAP 347
RG G +PC P PR S P H + A SA PA + AP H P
Sbjct: 85 RGGGVGGDPCIPLRPVQPRLSPPQPPPYHHYLYTTTAPPSALHPMSYPATYPAPPRHQQP 144
Query: 348 AA 353
AA
Sbjct: 145 AA 146
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 28.7 bits (61), Expect = 4.7
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 5/106 (4%)
Frame = +3
Query: 54 PRRPPTSWPGGIVSEYRAP*SN--HPPRDAHSLHCPAYCSRGTG-CP*NPCC--SSYPHH 218
P PTS S +P S+ P A+S P Y P +P SS +
Sbjct: 1757 PSYSPTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYT 1816
Query: 219 PRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAH 356
P +Y P SP+ + ++S ++P+Y P+ +PT AH
Sbjct: 1817 PSHAYSPSSPNYYSSTSPTYSPTSPSYS-QPSPSYSPTSRVEEEAH 1861
>01_03_0008 + 11594061-11594078,11594201-11594285,11594506-11595149
Length = 248
Score = 28.7 bits (61), Expect = 4.7
Identities = 23/63 (36%), Positives = 26/63 (41%)
Frame = +3
Query: 237 PCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSAIHQV 416
P P+ EA+ A AP APA AP+ A P A PA AT IH V
Sbjct: 82 PPPPAEGEAAPPPA--DAPPPEEAPAAEPAPSEAAPPPPAEADQAAAPPATDAT-VIHMV 138
Query: 417 PAY 425
Y
Sbjct: 139 HDY 141
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 198 CSSYPHHPRSSYLPCSPSSHEASSYQAIH 284
CSSY PR+SY P SS SS + H
Sbjct: 122 CSSYQPSPRASYNPSPASSSFPSSGSSSH 150
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 123 PPRDAHSLHCPAYCSRGTGCP*NP---CCSSYPHHPRSSYLPCS 245
P ++S H PA S G+ P N SSYPH +++P S
Sbjct: 84 PIHASYSGHAPAGSSSGSYAPYNTQHMPASSYPHGSEDNFIPSS 127
>02_03_0265 + 17066253-17066501,17067102-17068121
Length = 422
Score = 28.3 bits (60), Expect = 6.2
Identities = 24/97 (24%), Positives = 37/97 (38%)
Frame = +3
Query: 132 DAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAP 311
D HC + R N C + RSSY P S + A++ S PT A
Sbjct: 189 DGKKWHCRSIVDRP-----NALCDYHLARSRSSYTPSSENGASATAAATCSSGPTKADAI 243
Query: 312 AGHEAPTYHAAPAAHSATTYHTAPAIHATSAIHQVPA 422
+AP ++ A ++ A + A +A P+
Sbjct: 244 GKIKAPPAKSSGAKRNSPGGAAASSSKAAAATATAPS 280
>01_06_0451 -
29476892-29477516,29477600-29477843,29478313-29478714,
29481164-29481358,29481418-29481537,29481615-29481683,
29481901-29481999,29483857-29483946,29484049-29484180,
29485062-29485173
Length = 695
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 3/91 (3%)
Frame = +3
Query: 123 PPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEAS---SYQAIHSAP 293
PP+ H P +R G +P S H + P H ++ S+ H
Sbjct: 150 PPKGRHHHSLPVNNTRVKGPAYSPSNSPSIHRKHGIPVAAPPKQHSSNLPPSHHRPHKGS 209
Query: 294 TYHVAPAGHEAPTYHAAPAAHSATTYHTAPA 386
++P H+A +A+ H + H +PA
Sbjct: 210 FPVISPTPHKAD--NASATKHGRSGLHHSPA 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,000,015
Number of Sequences: 37544
Number of extensions: 502104
Number of successful extensions: 1733
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1717
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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