Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30139
(698 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 34 0.079
At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1) domain... 34 0.079
At5g27690.1 68418.m03321 heavy-metal-associated domain-containin... 33 0.24
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 32 0.42
At4g11610.1 68417.m01859 C2 domain-containing protein contains I... 32 0.42
At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to e... 31 0.97
At4g18890.1 68417.m02785 brassinosteroid signalling positive reg... 31 0.97
At3g43583.1 68416.m04636 hypothetical protein 31 0.97
At5g15890.1 68418.m01859 expressed protein 30 1.7
At1g32090.1 68414.m03949 early-responsive to dehydration protein... 30 1.7
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 6.8
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 6.8
At1g09480.1 68414.m01060 cinnamyl-alcohol dehydrogenase family /... 28 6.8
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 34.3 bits (75), Expect = 0.079
Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Frame = +3
Query: 54 PRRPPTSWPGGIVSEYRAP*SNHPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHH-PRSS 230
P PP P + S P + PP P YC+R P PH P
Sbjct: 498 PPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPP--------PHSPPPPQ 549
Query: 231 YLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAP 329
+ P P + SS HS+P H P H P
Sbjct: 550 FSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSPP 582
>At2g01190.1 68415.m00030 octicosapeptide/Phox/Bem1p (PB1)
domain-containing protein Pfam profile PF00564: PB1
domain
Length = 720
Score = 34.3 bits (75), Expect = 0.079
Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Frame = +3
Query: 210 PHHPRSSYLPCSPS-SHEASSYQAIHSAPTYHVAPAG-HEAPTYHAAPAAHSATTYHTAP 383
P P S +P SPS S A S + H T P H P A Y TAP
Sbjct: 564 PPRPYSMPVPQSPSVSDAAGSIPSNHPNSTMMPPPPNNHMRSVSSGKPEMGQAGVYTTAP 623
Query: 384 AIHATSAIHQVP 419
+ +HQ+P
Sbjct: 624 GVGGAQMVHQIP 635
>At5g27690.1 68418.m03321 heavy-metal-associated domain-containing
protein very low similarity to copper homeostasis factor
from Arabidopsis thaliana [gi:3168840]; contains Pfam
heavy metal associated domain PF00403
Length = 352
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +3
Query: 219 PRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAP 383
P+ ++ P H Q H PT H P H Y P + YHT P
Sbjct: 218 PQDHHIIHGPPPHLHHHQQQNHPYPTVHSPPRHHPQQMYGPGPGLPPPSFYHTQP 272
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 31.9 bits (69), Expect = 0.42
Identities = 19/43 (44%), Positives = 20/43 (46%)
Frame = +3
Query: 276 AIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIHATSA 404
A AP APA AP AAPAA +A APA A A
Sbjct: 177 AAGGAPAAEAAPAAGAAPAAGAAPAAGAAPAAGAAPAAGAAPA 219
Score = 31.5 bits (68), Expect = 0.56
Identities = 18/39 (46%), Positives = 19/39 (48%)
Frame = +3
Query: 306 APAGHEAPTYHAAPAAHSATTYHTAPAIHATSAIHQVPA 422
APA AP AAPAA +A APA A A PA
Sbjct: 181 APAAEAAPAAGAAPAAGAAPAAGAAPAAGAAPAAGAAPA 219
Score = 31.1 bits (67), Expect = 0.73
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +3
Query: 261 ASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPA 386
A A +AP APA AP AAPAA +A APA
Sbjct: 178 AGGAPAAEAAPAAGAAPAAGAAPAAGAAPAAGAAPAAGAAPA 219
Score = 29.5 bits (63), Expect = 2.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +3
Query: 237 PCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSAT 365
P + ++ A + A +AP APA AP AAPAA +T
Sbjct: 182 PAAEAAPAAGAAPAAGAAPAAGAAPAAGAAPAAGAAPAAGGST 224
Score = 27.9 bits (59), Expect = 6.8
Identities = 17/39 (43%), Positives = 18/39 (46%)
Frame = +3
Query: 306 APAGHEAPTYHAAPAAHSATTYHTAPAIHATSAIHQVPA 422
A A AP AAPAA +A APA A A PA
Sbjct: 175 ASAAGGAPAAEAAPAAGAAPAAGAAPAAGAAPAAGAAPA 213
>At4g11610.1 68417.m01859 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1011
Score = 31.9 bits (69), Expect = 0.42
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = -1
Query: 659 QVCKEGIIHPLDDITIHGSSLLRFVGRPVWR 567
+VC EG H LD+ T H SS LR RP+WR
Sbjct: 571 RVCLEGGYHVLDEST-HYSSDLRPSARPLWR 600
>At5g39310.1 68418.m04760 expansin, putative (EXP24) similar to
expansin - Prunus armeniaca, EMBL:U93167; alpha-expansin
gene family, PMID:11641069
Length = 296
Score = 30.7 bits (66), Expect = 0.97
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Frame = +3
Query: 216 HPRSSYLPCS-PSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAHSATTYHTAPAIH 392
H +S++P P +H + H A H A H A H A +H A H H
Sbjct: 12 HDHASHVPGGRPGAHPSHGAHPAHGAHPSHGAHPSHGAHPSHGAHPSHGALPSHGGQVPH 71
Query: 393 A 395
+
Sbjct: 72 S 72
>At4g18890.1 68417.m02785 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 284
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 198 CSSYPHHPRSSYLPCSPSS 254
CSSY H PR+SY P SPSS
Sbjct: 92 CSSYQHSPRASYNP-SPSS 109
>At3g43583.1 68416.m04636 hypothetical protein
Length = 100
Score = 30.7 bits (66), Expect = 0.97
Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Frame = +3
Query: 114 SNHPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCS---PSSHEASSY-QAI 281
S PP HC R P +P P P S P S PSS E + Q
Sbjct: 3 SPEPPPHCRGFHCHRSNHRPPEKPPSPEPPPSPEPPPSPEKPTSPEQPSSPEPPPHCQGF 62
Query: 282 HSAPTYHVAPAGHEAPTYHAAPA 350
H ++H + H + HAA A
Sbjct: 63 HCHRSFHCHRSNHRRRSNHAAGA 85
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 567 PPHRATHKSQQRGPVNGDVVQGVNNSLLANLMGS 668
PPHR + Q PVNG + +N++ L +L S
Sbjct: 130 PPHRNSSADQSPSPVNGPIPAPLNHTSLRHLNSS 163
>At1g32090.1 68414.m03949 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 806
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 201 SSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTY 335
SS+ HH +S SPSSH AS+Y+ S YH +E Y
Sbjct: 762 SSHHHHVYNS---TSPSSHYASAYEQSSSQYEYHYNTHQYEEHEY 803
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 6.8
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +3
Query: 42 CGRKPRRPPTSWPGGIVSEYRAP*SNHPPRDAHSLHCPA-YCSRGTGCP*NP-C-CSSYP 212
CG P P S P + +P S H P + H P + T P P C C S P
Sbjct: 58 CGSPPYDPSPSTPS-----HPSPPS-HTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPP 111
Query: 213 HHPRSSYLPCSPSSHEASSY 272
HP + P +P SH S+
Sbjct: 112 SHPSTPSHPSTP-SHPTPSH 130
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 6.8
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +3
Query: 42 CGRKPRRPPTSWPGGIVSEYRAP*SNHPPRDAHSLHCPA-YCSRGTGCP*NP-C-CSSYP 212
CG P P S P + +P S H P + H P + T P P C C S P
Sbjct: 58 CGSPPYDPSPSTPS-----HPSPPS-HTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPP 111
Query: 213 HHPRSSYLPCSPSSHEASSY 272
HP + P +P SH S+
Sbjct: 112 SHPSTPSHPSTP-SHPTPSH 130
>At1g09480.1 68414.m01060 cinnamyl-alcohol dehydrogenase family /
CAD family similar to cinnamyl alcohol dehydrogenase,
Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
unguiculata [gi:1854445]
Length = 369
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -3
Query: 180 SLCHGSSMQGSVVNGRLVVDGLIMAHDILRRYRRAMM*EACVA 52
+L H +++ NGR ++DG IM+ + R ++ + C+A
Sbjct: 280 ALAHIKALETPSANGRYIIDGPIMSVSDIIDILRELLPDLCIA 322
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,850,644
Number of Sequences: 28952
Number of extensions: 359484
Number of successful extensions: 1145
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1140
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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