Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30138
         (709 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    28   0.065
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    23   1.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.3  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   4.3  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   7.4  
AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    21   9.8  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    21   9.8  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    21   9.8  
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    21   9.8  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    21   9.8  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    21   9.8  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    21   9.8  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           21   9.8  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    21   9.8  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 28.3 bits (60), Expect = 0.065
 Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
 Frame = +3

Query: 237 PCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAASL-CNYISYSSSNPRYFSYSP 413
           P + ++  A+ Y+   +AP     P+     + H   ++S  CNY +YSS++  +  + P
Sbjct: 110 PAATAAATATEYKYSAAAP----GPSDPSVSSCHQGFSSSTWCNYSAYSSASRHHVDHQP 165

Query: 414 GPRL 425
            P L
Sbjct: 166 VPYL 169


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 195 CCSSYPHHPRSSYLPCSPSSH 257
           C ++YP++    YL  S  SH
Sbjct: 252 CYNNYPYYSNMDYLSSSTMSH 272


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 625 HP*RHHHHGSRVEI 584
           HP +H H+G+ V++
Sbjct: 23  HPHQHQHYGAAVQV 36


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -1

Query: 625 HP*RHHHHGSRVEI 584
           HP +H H+G+ V++
Sbjct: 23  HPHQHQHYGAAVQV 36


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +2

Query: 425 TIQHQLFMKLQLFTF 469
           +++HQL+ K+Q +T+
Sbjct: 33  SLEHQLWQKIQAWTY 47


>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -1

Query: 127 GGWFDHGARYSETI 86
           GGW + G++YS  +
Sbjct: 102 GGWAEGGSKYSAMV 115


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 21/92 (22%), Positives = 38/92 (41%)
 Frame = +3

Query: 120 HPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTY 299
           HP   A   +  +  S G   P +   +  P  PRS+    +PS+  A+    + S  + 
Sbjct: 94  HP--SASCKYADSTSSTGVASPQDLSTNGAP--PRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 300 HVAPAGHEAPTYHAAPAASLCNYISYSSSNPR 395
             +P G  A +  +   +S  +  S +SS  +
Sbjct: 150 STSPPGKPATSTTSQNLSSPASSTSSTSSTEK 181


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 21/92 (22%), Positives = 38/92 (41%)
 Frame = +3

Query: 120 HPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTY 299
           HP   A   +  +  S G   P +   +  P  PRS+    +PS+  A+    + S  + 
Sbjct: 94  HP--SASCKYADSTSSTGVASPQDLSTNGAP--PRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 300 HVAPAGHEAPTYHAAPAASLCNYISYSSSNPR 395
             +P G  A +  +   +S  +  S +SS  +
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEK 181


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
           protein.
          Length = 230

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 21/92 (22%), Positives = 38/92 (41%)
 Frame = +3

Query: 120 HPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTY 299
           HP   A   +  +  S G   P +   +  P  PRS+    +PS+  A+    + S  + 
Sbjct: 94  HP--SASCKYADSTSSTGVASPQDLSTNGAP--PRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 300 HVAPAGHEAPTYHAAPAASLCNYISYSSSNPR 395
             +P G  A +  +   +S  +  S +SS  +
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEK 181


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 21/92 (22%), Positives = 38/92 (41%)
 Frame = +3

Query: 120 HPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTY 299
           HP   A   +  +  S G   P +   +  P  PRS+    +PS+  A+    + S  + 
Sbjct: 94  HP--SASCKYADSTSSTGVASPQDLSTNGAP--PRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 300 HVAPAGHEAPTYHAAPAASLCNYISYSSSNPR 395
             +P G  A +  +   +S  +  S +SS  +
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEK 181


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 21/92 (22%), Positives = 38/92 (41%)
 Frame = +3

Query: 120 HPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTY 299
           HP   A   +  +  S G   P +   +  P  PRS+    +PS+  A+    + S  + 
Sbjct: 94  HP--SASCKYADSTSSTGVASPQDLSTNGAP--PRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 300 HVAPAGHEAPTYHAAPAASLCNYISYSSSNPR 395
             +P G  A +  +   +S  +  S +SS  +
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEK 181


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 21/92 (22%), Positives = 38/92 (41%)
 Frame = +3

Query: 120 HPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTY 299
           HP   A   +  +  S G   P +   +  P  PRS+    +PS+  A+    + S  + 
Sbjct: 50  HP--SASCKYADSTSSTGVASPQDLSTNGAP--PRSTPPLSTPSNSNATKSSGLTSPLSV 105

Query: 300 HVAPAGHEAPTYHAAPAASLCNYISYSSSNPR 395
             +P G  A +  +   +S  +  S +SS  +
Sbjct: 106 STSPPGKPATSTASQNLSSPASSTSSTSSTEK 137


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 21/92 (22%), Positives = 38/92 (41%)
 Frame = +3

Query: 120 HPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTY 299
           HP   A   +  +  S G   P +   +  P  PRS+    +PS+  A+    + S  + 
Sbjct: 94  HP--SASCKYADSTSSTGVASPQDLSTNGAP--PRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 300 HVAPAGHEAPTYHAAPAASLCNYISYSSSNPR 395
             +P G  A +  +   +S  +  S +SS  +
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEK 181


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 21/92 (22%), Positives = 38/92 (41%)
 Frame = +3

Query: 120 HPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTY 299
           HP   A   +  +  S G   P +   +  P  PRS+    +PS+  A+    + S  + 
Sbjct: 94  HP--SASCKYADSTSSTGVASPQDLSTNGAP--PRSTPPLSTPSNSNATKSSGLTSPLSV 149

Query: 300 HVAPAGHEAPTYHAAPAASLCNYISYSSSNPR 395
             +P G  A +  +   +S  +  S +SS  +
Sbjct: 150 STSPPGKPATSTASQNLSSPASSTSSTSSTEK 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,108
Number of Sequences: 336
Number of extensions: 3951
Number of successful extensions: 15
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)