Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30138
(709 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 30 0.37
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 29 0.65
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 2.6
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.6
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito... 27 2.6
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch... 27 2.6
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 4.6
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 26 4.6
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 8.0
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 8.0
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 25 8.0
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 25 8.0
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 29.9 bits (64), Expect = 0.37
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = +2
Query: 428 IQHQLFMKLQLFTFPPHFTP--PQLDM 502
+QH LF KL+L PPH P P LD+
Sbjct: 342 LQHSLFFKLKLKFLPPHKLPWIPSLDV 368
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 29.1 bits (62), Expect = 0.65
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +3
Query: 189 NPCCSSYPHHPRSSYLPCSPS-SHEASSYQAIHSAPTYHVAPAGHE--APTYHAAPAASL 359
+P Y P +Y+P SPS S + SY ++P+Y + +P+Y A +
Sbjct: 1559 SPSSPGYSTSP--AYMPSSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSPSYSATSPSYS 1614
Query: 360 CNYISYSSSNPRYFSYSP 413
SYS ++P Y SP
Sbjct: 1615 PTSPSYSPTSPSYSPTSP 1632
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = -1
Query: 577 RPV*GSSTE*EYPYLGWAYSST*DLHVQLRRREVRWKREQLELHEQL 437
+P S+ E + P L +L L+R+E+ ++REQ+EL +L
Sbjct: 43 KPSVNSANETKNPKLASLEFQLENLKNDLKRKELEFEREQIELQRKL 89
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 233 PTMQPQQSRGFFLPSNPLCPYLPCSSSRP 319
P MQP QS ++ PS+P+ P ++P
Sbjct: 418 PPMQPVQSTQYYQPSSPVQPVQNVKPAQP 446
>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
pyrophosphate synthase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 920
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +1
Query: 532 LNTDTLTRLKTLTPGDHKSQHETRDGDVVKG 624
+N D +K T G H S ETR VV G
Sbjct: 251 MNVDNAEDVKVYTVGPHYSHAETRKSPVVDG 281
>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 2.6
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 216 HPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAASLCNYISYSSSN-P 392
HP + SPS+ + + S+ +Y V+P +PT + P S N+ S S N P
Sbjct: 103 HPSNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPTSPT-SSGPIGS--NFDSASEHNGP 159
Query: 393 RYFSYSPGP 419
Y GP
Sbjct: 160 VYPQDQQGP 168
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 4.6
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = +3
Query: 231 YLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAASLCNYISYSSSNP--RY-F 401
+ PC S + + S T H +P + P+AS+ + I +SSS+ +Y
Sbjct: 455 FRPCDEESFLKENKYKVFSCITCHNSPVYLVIELFSIGPSASVID-IRFSSSDDSIKYTS 513
Query: 402 SYSPGPRL 425
SYSP P L
Sbjct: 514 SYSPMPFL 521
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 26.2 bits (55), Expect = 4.6
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Frame = +3
Query: 243 SPSSHEASSYQAIH-SAPTYHVAPAGHEAPTYHAAPAASLCNYISYSSSNPRYFSYSPGP 419
S +S +A+ I S P AP EAP+ H PAA + + + P P
Sbjct: 498 SSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAP 557
Query: 420 RLP 428
+P
Sbjct: 558 SVP 560
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 25.4 bits (53), Expect = 8.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +3
Query: 201 SSYPHHPRSSYLPCSPSSHEASSYQAIHSA 290
SS HH RSSY + + + SY + +A
Sbjct: 163 SSSAHHSRSSYYDLATPTRSSFSYNTVGAA 192
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 25.4 bits (53), Expect = 8.0
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = +1
Query: 472 TALHAASAGHEDLMLTNMPTLNTDTLTRLKTLTPGDHKSQHETRDGDVVKGEYFPSWQP* 651
T+L + +A + ++TN N++ T+ + LTP +H R D G P+
Sbjct: 50 TSLTSMTASEQIPLVTNNGNGNSNVSTQYQRLTP----REHVLRRPDTYIGSIEPTTSEM 105
Query: 652 WVHSARSPTL 681
WV + L
Sbjct: 106 WVFDSEKNKL 115
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Frame = +2
Query: 215 PSKKLLPTMQPQQSRGFFLPSNPLCPYLPCSSSRPRSSY-LPCSSSCF 355
PS P Q+ F+ + P Y P S RPR SY P C+
Sbjct: 99 PSSNYNTAKPPYQTSQFY--ARPQSSYAPPPSGRPRISYPYPPGYMCY 144
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 25.4 bits (53), Expect = 8.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 649 KVARKGSIHP*RHHHH 602
K+ R GS+H HHHH
Sbjct: 471 KLIRIGSLHRHHHHHH 486
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,991,999
Number of Sequences: 5004
Number of extensions: 62633
Number of successful extensions: 215
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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