Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30138
(709 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0302 - 2021221-2023305 41 8e-04
03_03_0188 + 15269347-15270213 33 0.29
06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904... 31 1.2
04_04_0592 + 26477974-26479311 31 1.2
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 31 1.2
04_03_1022 - 21778315-21779007 30 1.6
02_05_0554 + 29929860-29929959,29932944-29934220 30 1.6
08_02_1245 - 25557201-25558199 30 2.1
08_02_0783 - 21166491-21166892,21167139-21167251,21168127-211682... 30 2.1
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442... 29 2.7
01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574 29 2.7
05_01_0462 - 3658153-3658290,3658394-3658540,3658622-3658720,365... 29 3.6
04_04_0857 + 28794127-28794786 29 3.6
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 29 4.8
07_03_0683 + 20671067-20671951,20672030-20672203 29 4.8
07_01_0986 - 8314733-8314783,8315895-8318381 28 6.3
06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970 28 6.3
>02_01_0302 - 2021221-2023305
Length = 694
Score = 41.1 bits (92), Expect = 8e-04
Identities = 34/103 (33%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = +3
Query: 114 SNHPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAP 293
S+H P S P+Y S G P P S P SY P PSS + P
Sbjct: 455 SSHSPPGGSSSTTPSYPSPNGGKPSTPSHPSPPGSTTPSY-PSPPSSS---------TTP 504
Query: 294 TYHVAPAGHEAPTYHAAPAASLC-NYISYSSSNPRYFSYSPGP 419
+YH P GH P++ + P++S S S P + SY P P
Sbjct: 505 SYHSPPQGHTTPSHPSPPSSSTAPPSHSPPQSTPTHPSY-PSP 546
Score = 35.1 bits (77), Expect = 0.055
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = +3
Query: 207 YPHHPRSSYLPCSPSSHEASSYQAI--HSAPTYHVAPAGHEAPTYHAAPAASLCNYISYS 380
YP P SS P PS +SSY A + P+Y P+ P+ H+ P S SY
Sbjct: 414 YPQPPSSSPTPSYPS--PSSSYPAPPGSNTPSYPSPPSSATTPSSHSPPGGSSSTTPSYP 471
Query: 381 SSN 389
S N
Sbjct: 472 SPN 474
Score = 29.5 bits (63), Expect = 2.7
Identities = 35/126 (27%), Positives = 45/126 (35%), Gaps = 4/126 (3%)
Frame = +3
Query: 63 PPTSWPGGIVSEYRAP*SNHP-PRDAHSLHCPAYCSRGTGCP*NPCCSSYP--HHPRSSY 233
PPTS V P S P P S P S G P +S P H P +
Sbjct: 554 PPTSADRPDVRFAPPPGSYGPIPSTPPSSGSPPSPSSGYQPPSGQPGASPPTQHVPGAGT 613
Query: 234 LPCSPSSHEASSYQAIHSAPTYHVAPAGHE-APTYHAAPAASLCNYISYSSSNPRYFSYS 410
+P SH S S P++H P H +P H + + +P S
Sbjct: 614 PTTTPPSHSHPSTPPSPSGPSFHPPPTPHNCSPPSHGSSTGG-----GHGGGHPPSTSTP 668
Query: 411 PGPRLP 428
PG +LP
Sbjct: 669 PGGKLP 674
>03_03_0188 + 15269347-15270213
Length = 288
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 201 SSYPHHPRSSYLPCSPSSHEASSYQAI-HSAPTYHVAPAGHEAPTYHAAPAASLCN 365
SSY HH +S +LP S SS+ S + + H++ + + +AP H P A N
Sbjct: 31 SSYQHH-QSLFLPSSSSSYLDSPFHGLLHTSSSSSATMSPSQAPPPHPPPPAPTSN 85
>06_03_0479 -
21289903-21290124,21290207-21290342,21290435-21290490,
21290734-21290811,21290902-21290988,21291067-21291127,
21291220-21291308,21291448-21291545,21291655-21291754,
21293968-21294030
Length = 329
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Frame = +3
Query: 258 EASSYQAIHSAPTYHVAPAGHE---APTYHAAPAASLCNYISYSSSNPRYFSYSP 413
EASS +H+ YH++P GHE AP ++P AS+ S +F P
Sbjct: 67 EASSL-LLHNFCIYHISPPGHELGAAPVSPSSPVASVDELADQVSDVLDFFGLGP 120
>04_04_0592 + 26477974-26479311
Length = 445
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/54 (40%), Positives = 28/54 (51%)
Frame = +2
Query: 167 PWHRLPLKSMLLQLSTPSKKLLPTMQPQQSRGFFLPSNPLCPYLPCSSSRPRSS 328
P R PL +LL LS P LL ++ S F S LCP LP +SRP ++
Sbjct: 5 PTPRKPLPLLLLSLSLPFLLLLLSLVFLLSHTTF--SLLLCPLLPRPTSRPNAT 56
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 30.7 bits (66), Expect = 1.2
Identities = 25/80 (31%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Frame = +3
Query: 66 PTSWPGGIVSEYRAP*SNHP-PRDAHSLHCPAYCSRGTGC--P*NPCCSSYPHHPRSSYL 236
PT+ PGG P P P S P CS T C P P + P P SY
Sbjct: 270 PTT-PGGGGGYTPTPSDTPPSPSSGSSRTTPGGCSTPTPCGTPPAPSSGTSPTTPGGSYY 328
Query: 237 PCSPSSHEASSYQAIHSAPT 296
P +PS + + ++PT
Sbjct: 329 PPTPSIGDVPPSPSSDTSPT 348
>04_03_1022 - 21778315-21779007
Length = 230
Score = 30.3 bits (65), Expect = 1.6
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 2/101 (1%)
Frame = +3
Query: 54 PRRPPTSWPGGIVSEYRAP*SNHPPRDAHSLHCPAYCSRGTGCP*NPCCSSY--PHHPRS 227
P PP P V + P S P + H P Y T P P Y PHHP
Sbjct: 36 PPPPPPPPPPPYVPPHLLPPSPAPQQWYD--HPPNYHPPHTPAP-APAPGPYIPPHHPHH 92
Query: 228 SYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPA 350
+ P +P+ +++ P Y+ P P Y+ +PA
Sbjct: 93 HHPP-TPAPAPSTTPGGHGGVPPYYPPPPVTPTPYYYPSPA 132
>02_05_0554 + 29929860-29929959,29932944-29934220
Length = 458
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = +3
Query: 297 YHVAPAGHEAPTYHAAPAASLCNYISYSSSNPRYFSYSP 413
Y +AP+ + TY P++S Y+S S NP +SY+P
Sbjct: 263 YQLAPSLGYSFTY-CLPSSSSSGYLSLGSYNPGQYSYTP 300
>08_02_1245 - 25557201-25558199
Length = 332
Score = 29.9 bits (64), Expect = 2.1
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 65 SYIMARRYRLRISCAMIKPSTTRRPFTTLPCILLPW-HRLPLKSMLLQLSTPSKKLLPTM 241
S+ +A R+R + A P T+ P +P I LP+ H PL + L + PS +LL T
Sbjct: 86 SFAIANRHRHPVVSAGHHPLLTQSPHDLVPFIELPFRHIHPLAAALDAI--PSPRLLGTH 143
Query: 242 QP 247
P
Sbjct: 144 MP 145
>08_02_0783 -
21166491-21166892,21167139-21167251,21168127-21168208,
21168298-21168416,21168471-21168528,21168954-21169016,
21169641-21169850,21171549-21171731
Length = 409
Score = 29.9 bits (64), Expect = 2.1
Identities = 25/71 (35%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +3
Query: 141 SLHCPAYCSRGTGCP*NPCC-SSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAG 317
++ A+ S + P P S PH+P S S S+QA H P Y V PA
Sbjct: 339 NMQAGAFGSASSAYPTQPMMPGSVPHYPGIG----SSSGALPVSFQASHQMPQYGVPPA- 393
Query: 318 HEAPTYHAAPA 350
AP +HA PA
Sbjct: 394 --AP-HHAPPA 401
>04_04_0239 -
23843235-23843243,23843334-23844047,23844138-23844287,
23844389-23844601,23844697-23844811,23844919-23846300,
23847217-23847279
Length = 881
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +3
Query: 249 SSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAA 353
S++ S +++ S+ V GH APT H+APA+
Sbjct: 277 STNAQSKGKSVTSSAVPQVTSIGHGAPTVHSAPAS 311
>01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574
Length = 212
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/62 (35%), Positives = 25/62 (40%)
Frame = +3
Query: 168 RGTGCP*NPCCSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAP 347
RG G +PC P PR S P H + A SA PA + AP H P
Sbjct: 85 RGGGVGGDPCIPLRPVQPRLSPPQPPPYHHYLYTTTAPPSALHPMSYPATYPAPPRHQQP 144
Query: 348 AA 353
AA
Sbjct: 145 AA 146
>05_01_0462 -
3658153-3658290,3658394-3658540,3658622-3658720,
3658802-3659253,3659597-3660280,3662072-3662180
Length = 542
Score = 29.1 bits (62), Expect = 3.6
Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Frame = +3
Query: 123 PPRDAHSLHCPAYCSRGTGCP*NPC---CSSYPHHPRSSYLPCSPSSHEASSYQAIHSAP 293
P ++S H PA S G+ P N SSYPH +++P SSH A+
Sbjct: 84 PIHASYSGHAPAGSSSGSYAPYNTQHMPASSYPHGSEDNFIP---SSHVDGRRVALK--- 137
Query: 294 TYHVAPAGHEAPTYHAAPAASLCNYISYSSSNPRYFSYSPGPRLP 428
P H + NY + SSSN ++ P +P
Sbjct: 138 --------RRNPIIHPTDGFGVGNYYAGSSSNTQFSRPMPPNPIP 174
>04_04_0857 + 28794127-28794786
Length = 219
Score = 29.1 bits (62), Expect = 3.6
Identities = 15/53 (28%), Positives = 23/53 (43%)
Frame = +3
Query: 198 CSSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAS 356
C ++ PR +P + HE A+ +A + AP H A AA A+
Sbjct: 105 CLNFADSPRRLRVPPLGAGHEEIRRAAVEAAELFRPAPGQHNAAAEAAAAVAA 157
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 28.7 bits (61), Expect = 4.8
Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 7/108 (6%)
Frame = +3
Query: 114 SNHPPRDAHSLHCPAYCSRGTG-CP*NPCCS--SYPHHPRS-SYLPCSPS-SHEASSYQA 278
S P ++S P+Y P +P S S + P S +Y P SPS S + SY
Sbjct: 1619 SYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSP 1678
Query: 279 IHSAPTYHVAPAGHE--APTYHAAPAASLCNYISYSSSNPRYFSYSPG 416
++P+Y + +P+Y + SYS ++P Y SPG
Sbjct: 1679 --TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1724
>07_03_0683 + 20671067-20671951,20672030-20672203
Length = 352
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +3
Query: 309 PAGHEAPTYHAAP--AASLCNYISYSSSNPRY 398
PA PT AP ++CN IS SSS P Y
Sbjct: 19 PAAARNPTVSVAPRTGGAICNSISSSSSTPPY 50
>07_01_0986 - 8314733-8314783,8315895-8318381
Length = 845
Score = 28.3 bits (60), Expect = 6.3
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +3
Query: 210 PHHPRSSYLPCSPSSHEASSY-QAIHSAPTYHVAPAGHEAPTYHAAPAASLCNYISYSSS 386
P H SS P P S A + + +APT+ A + T+ A+P A + + S
Sbjct: 27 PRHLSSSSPPSQPPSSPAGELLRLLSAAPTWTPDLARAVSSTFSASPTADVVISVLRSIR 86
Query: 387 NP 392
NP
Sbjct: 87 NP 88
>06_03_0420 + 20593468-20593719,20594534-20594581,20595155-20595970
Length = 371
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +3
Query: 198 CSSYPHHPRSSYLPCSPSSHEASSYQAIH 284
CSSY PR+SY P SS SS + H
Sbjct: 122 CSSYQPSPRASYNPSPASSSFPSSGSSSH 150
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,641,586
Number of Sequences: 37544
Number of extensions: 506327
Number of successful extensions: 1774
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1761
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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