Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30138
         (709 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    26   0.30 
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.6  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.6  
AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    22   6.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   8.7  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 26.2 bits (55), Expect = 0.30
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = -2

Query: 666 CGMNPSRLPGREVFTLDDITITGL 595
           C M    +P  EVF    ITITGL
Sbjct: 359 CSMGVKYIPNTEVFNDTKITITGL 382


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 510 YVDEYAHPKYGYSYSVED 563
           Y+ EY  P+Y   Y +ED
Sbjct: 210 YMREYNDPEYKLDYFMED 227


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 104 CAMIKPSTTRRPFTTLPCIL 163
           CAM+K +    P   L CIL
Sbjct: 193 CAMLKENMPEFPLYQLSCIL 212


>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 299 VGRGRVDCLVGRSLVTAGAA 240
           +G+  ++CLVG+ +   G A
Sbjct: 19  IGKCLIECLVGKGMKVIGIA 38


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 563 PSHRATTNLNTRPVMVMSSRVNTSLPGNLDGF 658
           P+ +AT N+  +PV V+ S   + L  N   F
Sbjct: 888 PAKKAT-NIGGKPVAVVKSSAQSLLQSNQQHF 918


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,386
Number of Sequences: 438
Number of extensions: 4969
Number of successful extensions: 22
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)