Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30138
(709 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g13340.1 68417.m02084 leucine-rich repeat family protein / ex... 35 0.061
At3g43583.1 68416.m04636 hypothetical protein 32 0.32
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 32 0.43
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 32 0.43
At4g18890.1 68417.m02785 brassinosteroid signalling positive reg... 31 0.99
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 31 0.99
At5g52790.1 68418.m06551 CBS domain-containing protein-related c... 30 1.3
At3g16510.1 68416.m02107 C2 domain-containing protein contains s... 30 1.7
At2g39690.1 68415.m04869 expressed protein contains Pfam profile... 30 1.7
At1g79050.1 68414.m09217 DNA repair protein recA identical to DN... 30 1.7
At1g32090.1 68414.m03949 early-responsive to dehydration protein... 30 1.7
At1g23720.1 68414.m02994 proline-rich extensin-like family prote... 30 1.7
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 29 4.0
At3g28550.1 68416.m03565 proline-rich extensin-like family prote... 28 5.3
At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin; g... 28 7.0
At1g09480.1 68414.m01060 cinnamyl-alcohol dehydrogenase family /... 28 7.0
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ... 27 9.2
At1g32120.1 68414.m03952 expressed protein contains Pfam profile... 27 9.2
>At4g13340.1 68417.m02084 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 760
Score = 34.7 bits (76), Expect = 0.061
Identities = 37/126 (29%), Positives = 44/126 (34%), Gaps = 1/126 (0%)
Frame = +3
Query: 54 PRRPPTSWPGGIVSEYRAP*SNHPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHH-PRSS 230
P PP P + S P + PP P YC+R P PH P
Sbjct: 498 PPPPPPPPPPPVYSPPPPPVYSSPPPPPSPAPTPVYCTRPPPPP--------PHSPPPPQ 549
Query: 231 YLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAASLCNYISYSSSNPRYFSYS 410
+ P P + SS HS+P H P H P P S + SS P YS
Sbjct: 550 FSPPPPEPYYYSSPPPPHSSPPPHSPPPPHSPPP-PIYPYLSPPPPPTPVSSPPPTPVYS 608
Query: 411 PGPRLP 428
P P P
Sbjct: 609 PPPPPP 614
>At3g43583.1 68416.m04636 hypothetical protein
Length = 100
Score = 32.3 bits (70), Expect = 0.32
Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 4/91 (4%)
Frame = +3
Query: 114 SNHPPRDAHSLHCPAYCSRGTGCP*NPCCSSYPHHPRSSYLPCS---PSSHEASSY-QAI 281
S PP HC R P +P P P S P S PSS E + Q
Sbjct: 3 SPEPPPHCRGFHCHRSNHRPPEKPPSPEPPPSPEPPPSPEKPTSPEQPSSPEPPPHCQGF 62
Query: 282 HSAPTYHVAPAGHEAPTYHAAPAASLCNYIS 374
H ++H + H + HAA A ++ S
Sbjct: 63 HCHRSFHCHRSNHRRRSNHAAGATTVAGVTS 93
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 31.9 bits (69), Expect = 0.43
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Frame = +3
Query: 123 PPRDAHSLHCPAYCSRGTGC---P*NPCCS--SYPHHPRSSYLPCSPSSHEASSYQAIHS 287
PP +H P++ + C P +P S S+P P + P +PS H + + H+
Sbjct: 40 PPSGSHGTP-PSHTPPSSNCGSPPYDPSPSTPSHPSPPSHTPTPSTPS-HTPTPHTPSHT 97
Query: 288 APTYHVAPAGHEAPTYHAAPAASLCNYISYSSSNPRYFSY--SPGPRLP 428
PT H P +P H + + + S+P Y SP PR P
Sbjct: 98 -PTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPPSGGYYSSPPPRTP 145
Score = 27.9 bits (59), Expect = 7.0
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +3
Query: 42 CGRKPRRPPTSWPGGIVSEYRAP*SNHPPRDAHSLHCPA-YCSRGTGCP*NP-C-CSSYP 212
CG P P S P + +P S H P + H P + T P P C C S P
Sbjct: 58 CGSPPYDPSPSTPS-----HPSPPS-HTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPP 111
Query: 213 HHPRSSYLPCSPSSHEASSY 272
HP + P +P SH S+
Sbjct: 112 SHPSTPSHPSTP-SHPTPSH 130
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 31.9 bits (69), Expect = 0.43
Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 7/109 (6%)
Frame = +3
Query: 123 PPRDAHSLHCPAYCSRGTGC---P*NPCCS--SYPHHPRSSYLPCSPSSHEASSYQAIHS 287
PP +H P++ + C P +P S S+P P + P +PS H + + H+
Sbjct: 40 PPSGSHGTP-PSHTPPSSNCGSPPYDPSPSTPSHPSPPSHTPTPSTPS-HTPTPHTPSHT 97
Query: 288 APTYHVAPAGHEAPTYHAAPAASLCNYISYSSSNPRYFSY--SPGPRLP 428
PT H P +P H + + + S+P Y SP PR P
Sbjct: 98 -PTPHTPPCNCGSPPSHPSTPSHPSTPSHPTPSHPPSGGYYSSPPPRTP 145
Score = 27.9 bits (59), Expect = 7.0
Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +3
Query: 42 CGRKPRRPPTSWPGGIVSEYRAP*SNHPPRDAHSLHCPA-YCSRGTGCP*NP-C-CSSYP 212
CG P P S P + +P S H P + H P + T P P C C S P
Sbjct: 58 CGSPPYDPSPSTPS-----HPSPPS-HTPTPSTPSHTPTPHTPSHTPTPHTPPCNCGSPP 111
Query: 213 HHPRSSYLPCSPSSHEASSY 272
HP + P +P SH S+
Sbjct: 112 SHPSTPSHPSTP-SHPTPSH 130
>At4g18890.1 68417.m02785 brassinosteroid signalling positive
regulator-related contains similarity to BZR1 protein
[Arabidopsis thaliana] gi|20270971|gb|AAM18490
Length = 284
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/19 (73%), Positives = 15/19 (78%)
Frame = +3
Query: 198 CSSYPHHPRSSYLPCSPSS 254
CSSY H PR+SY P SPSS
Sbjct: 92 CSSYQHSPRASYNP-SPSS 109
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 30.7 bits (66), Expect = 0.99
Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Frame = +3
Query: 219 PRSSYLPCSPSSHEASSYQAIHSAPTYH-VAPAGHEAPTYHAAPAASLCNYISYSSSNPR 395
P + Y SP Y PTYH ++P P H+ P S I YS P
Sbjct: 704 PPAPYYYSSPQPPPPPHYSLPPPTPTYHYISPPPPPTP-IHSPPPQSHPPCIEYSPPPPP 762
Query: 396 YFSYSPGP 419
Y+P P
Sbjct: 763 TVHYNPPP 770
>At5g52790.1 68418.m06551 CBS domain-containing protein-related
contains Pfam profile PF01595: Domain of unknown
function, weak hit to PF00571: CBS domain
Length = 500
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 327 PTYHAAPAASLCNYISYSSSNPRYFSYSP 413
PT HA+P A + +S S+N RY+ SP
Sbjct: 455 PTLHASPPAQSPSILSPDSNNERYYYLSP 483
>At3g16510.1 68416.m02107 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 360
Score = 29.9 bits (64), Expect = 1.7
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = +3
Query: 207 YPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAP--AASLCNYISYS 380
YP Y P SP H +S + YH Y P A++L YS
Sbjct: 200 YPPLSSIGYPPSSPPQHYSSPPYPYPNPYQYHSHYPEQPVAVYPPPPPSASNLYPPPYYS 259
Query: 381 SSNPRYFSYSPGP 419
+S P++ SY P P
Sbjct: 260 TSPPQHQSYPPPP 272
Score = 27.9 bits (59), Expect = 7.0
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Frame = +3
Query: 201 SSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVA---PAGHEAPTYHAAPAASLCNYI 371
S YP P + Y P PS+ ++P H + P GH + P+ S +
Sbjct: 232 SHYPEQPVAVYPPPPPSASNLYPPPYYSTSPPQHQSYPPPPGHS--FHQTQPSQSFHGFA 289
Query: 372 SYSSSNPRYFSYSP 413
S N + Y P
Sbjct: 290 PSSPQNQHGYGYPP 303
>At2g39690.1 68415.m04869 expressed protein contains Pfam profile
PF04784: Protein of unknown function, DUF547
Length = 498
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = +3
Query: 240 CSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAASLCNYISYSSSNPRYFSYSPGP 419
CS S+ S YQ + YHV P T P + +IS SS + +F++ P
Sbjct: 215 CSRKSNTYSYYQNAMNLDPYHVLPDSSGGVTRDIGPYKNFI-HISRSSIDVTHFTHYCSP 273
Query: 420 RLP 428
+P
Sbjct: 274 AVP 276
>At1g79050.1 68414.m09217 DNA repair protein recA identical to DNA
repair protein recA, chloroplast [Precursor] SP:Q39199
from [Arabidopsis thaliana] ;contains Pfam profile:
PF00154 recA bacterial DNA recombination protein
Length = 439
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +2
Query: 266 FLPSNPLCPYLPCSSSRPRSSYLPCSS 346
F P +PL P+ PCSS P + C S
Sbjct: 15 FTPLSPLFPFTPCSSFSPSLRFSSCYS 41
>At1g32090.1 68414.m03949 early-responsive to dehydration
protein-related / ERD protein-related similar to ERD4
protein (early-responsive to dehydration stress)
[Arabidopsis thaliana] GI:15375406; contains Pfam
profile PF02714: Domain of unknown function DUF221
Length = 806
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +3
Query: 201 SSYPHHPRSSYLPCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTY 335
SS+ HH +S SPSSH AS+Y+ S YH +E Y
Sbjct: 762 SSHHHHVYNS---TSPSSHYASAYEQSSSQYEYHYNTHQYEEHEY 803
>At1g23720.1 68414.m02994 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 895
Score = 29.9 bits (64), Expect = 1.7
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = +3
Query: 210 PHHPRSSYLPCSPSSHEASSYQAIHSAPT---YH-VAPAGHEAPTYHAAPAASLCNYISY 377
P HP P P + S S PT YH P + +P+ A +S Y+ Y
Sbjct: 532 PPHPHVCVCPPPPPCYSHSPKIEYKSPPTPYVYHSPPPPPYYSPSPKPAYKSSPPPYV-Y 590
Query: 378 SSSNPRYFSYSPGP 419
SS P Y+S +P P
Sbjct: 591 SSPPPPYYSPAPKP 604
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/61 (32%), Positives = 25/61 (40%)
Frame = +3
Query: 246 PSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAASLCNYISYSSSNPRYFSYSPGPRL 425
P+ ASSY +S Y P PTY APA S + + S Y S + P
Sbjct: 54 PAPSPASSYGPQYSQEGYASQPNNPPPPTY--APAPSPASSYGHQYSQEGYASAASQPNY 111
Query: 426 P 428
P
Sbjct: 112 P 112
>At3g28550.1 68416.m03565 proline-rich extensin-like family protein
contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1018
Score = 28.3 bits (60), Expect = 5.3
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = +3
Query: 231 YLPCSPSSHEASSYQAIHSAPTY-HVAPAGHEAPTYHAAPAASLCNYISYSSSNPRYFSY 407
Y PS + A S + ++ +P + HV P Y +P + Y SS P Y
Sbjct: 609 YYKSPPSPYHAPSPKVLYKSPPHPHVCVCPPPPPCYSPSPK------VVYKSSPPPYVYS 662
Query: 408 SPGP 419
SP P
Sbjct: 663 SPPP 666
>At5g07520.1 68418.m00861 glycine-rich protein (GRP18) Oleosin;
glycine-rich protein 18 (GRP18) PMID:11431566;
Length = 228
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +3
Query: 237 PCSPSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAA 353
P + ++ A + A +AP APA AP AAPAA
Sbjct: 182 PAAEAAPAAGAAPAAGAAPAAGAAPAAGAAPAAGAAPAA 220
>At1g09480.1 68414.m01060 cinnamyl-alcohol dehydrogenase family /
CAD family similar to cinnamyl alcohol dehydrogenase,
Eucalyptus gunnii [gi:1143445], CPRD14 protein, Vigna
unguiculata [gi:1854445]
Length = 369
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 180 SLCHGSSMQGSVVNGRLVVDGLIMAHDILRRYRRAMM*EACVA 52
+L H +++ NGR ++DG IM+ + R ++ + C+A
Sbjct: 280 ALAHIKALETPSANGRYIIDGPIMSVSDIIDILRELLPDLCIA 322
>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
subunit (RPB205) (RPII) (RPB1) nearly identical to
P|P18616 DNA-directed RNA polymerase II largest subunit
(EC 2.7.7.6) {Arabidopsis thaliana}
Length = 1840
Score = 27.5 bits (58), Expect = 9.2
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = +3
Query: 114 SNHPPRDAHSLHCPAYCSRGTGCP*NPCCSSY-PHHPRSSYLPCSPSSHEASSYQAIHSA 290
S P ++S P+Y T +P SY P P +Y P SP+ + +S ++
Sbjct: 1607 SYSPTSPSYSPTSPSYSP--TSPSYSPTSPSYSPTSP--AYSPTSPA-YSPTSPAYSPTS 1661
Query: 291 PTYHVAPAGHE--APTYHAAPAASLCNYISYSSSNPRYFSYSPG 416
P+Y + +P+Y + SYS ++P Y SPG
Sbjct: 1662 PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPG 1705
Score = 27.5 bits (58), Expect = 9.2
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Frame = +3
Query: 114 SNHPPRDAHSLHCPAYCSRGTG-CP*NPCCS--SYPHHPRS-SYLPCSPS-SHEASSYQA 278
S P ++S P+Y P +P S S + P S Y P SPS S + SY
Sbjct: 1663 SYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGP 1722
Query: 279 IHSAPTYHVAPAGHEAPTYHAAPAASLCNYISYSSSNPRYFSYSP 413
++P+Y+ A + ++ A L YS ++P Y SP
Sbjct: 1723 --TSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSP 1765
>At1g32120.1 68414.m03952 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 1206
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +3
Query: 246 PSSHEASSYQAIHSAPTYHVAPAGHEAPTYHAAPAAS 356
P SHEASS + + P+ V+ ++ P+ +P+A+
Sbjct: 833 PRSHEASSSRGYNHPPSPRVSKELNKTPSISGSPSAT 869
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,362,629
Number of Sequences: 28952
Number of extensions: 360580
Number of successful extensions: 1184
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1168
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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