Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30137
         (705 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce...    26   4.6  
SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomy...    26   6.0  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   8.0  

>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -1

Query: 237 FTSIFETVNCFSRLLIALLYCNCVI-ILAQFLT 142
           F+    TVN +++  +  + CNC+I IL  FLT
Sbjct: 389 FSGWIGTVNPYTQTPVNAVICNCIISILILFLT 421


>SPAC19B12.02c |||1,3-beta-glucanosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = -1

Query: 702 MTQEMTSYYYVRNDIEKWIKFYGLSLYK 619
           +T++  +YY+   D +  + FYG+++Y+
Sbjct: 201 VTRDPMAYYFDCGDDDDHVDFYGINIYE 228


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/65 (24%), Positives = 32/65 (49%)
 Frame = +2

Query: 65  F*LINHFYIISSCTDFDVQIFVYLSTVKN*AKIITQLQYNNAISSREKQLTVSKILVKTS 244
           F  I  +Y++SS T   V IF+YL            + ++  ++S + +L +S  L+  S
Sbjct: 413 FCTIAAYYLVSSSTKITVFIFLYLMLT------FIGIIFSTFMTSEDAELVLSYDLMSKS 466

Query: 245 IYFGI 259
           ++  +
Sbjct: 467 LFISV 471


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,555,650
Number of Sequences: 5004
Number of extensions: 47094
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)